A novel scoring schema for peptide identification by searching protein sequence databases using tandem mass spectrometry data. (Q31037997)

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20 January 2020

title

A novel scoring schema for peptide identification by searching protein sequence databases using tandem mass spectrometry data (English)

1 reference

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20 January 2020

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3

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20 January 2020

Runsheng Chen

8

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20 January 2020

author name string

Zhuo Zhang

1

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20 January 2020

Shiwei Sun

2

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20 January 2020

Suhua Chang

4

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20 January 2020

Xiaofei Liu

5

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20 January 2020

Chungong Yu

6

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20 January 2020

Dongbo Bu

7

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publication date

26 April 2006

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20 January 2020

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20 January 2020

volume

7

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20 January 2020

page(s)

222

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An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database

20 January 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1463009

Deriving statistical models for predicting peptide tandem MS product ion intensities

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1463009

Statistical characterization of ion trap tandem mass spectra from doubly charged tryptic peptides

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1463009

ProbID: a probabilistic algorithm to identify peptides through sequence database searching using tandem mass spectral data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1463009

Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1463009

What does it mean to identify a protein in proteomics?

21 June 2018

1 reference

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Mass spectrometry in proteomics

21 June 2018

1 reference

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SCOPE: a probabilistic model for scoring tandem mass spectra against a peptide database.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1463009

Mobile and localized protons: a framework for understanding peptide dissociation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1463009

Five-membered ring formation in unimolecular reactions of peptides: a key structural element controlling low-energy collision-induced dissociation of peptides

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1463009

Tandem mass spectrometry: dissociation of ions by collisional activation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1463009

A statistical basis for testing the significance of mass spectrometric protein identification results

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1463009

Probability-based protein identification by searching sequence databases using mass spectrometry data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1463009

De novo peptide sequencing via tandem mass spectrometry

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1463009

Mass spectrometry and the age of the proteome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1463009

Method to correlate tandem mass spectra of modified peptides to amino acid sequences in the protein database

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1463009

The need for a public proteomics repository

21 June 2018

1 reference

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Intensity-based statistical scorer for tandem mass spectrometry.

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1463009

A dynamic programming approach to de novo peptide sequencing via tandem mass spectrometry.

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1463009

On the nature of the chemical noise in MALDI mass spectra

25 November 2018

1 reference

12 December 2020

1 reference

12 December 2020

Dissociation of the peptide bond in protonated peptides

1 reference

12 December 2020

Experimental Protein Mixture for Validating Tandem Mass Spectral Analysis

1 reference

12 December 2020

The role of nucleophile--electrophile interactions in the unimolecular and bimolecular gas-phase ion chemistry of peptides and related systems

1 reference

12 December 2020

Identifiers

DOI

10.1186/1471-2105-7-222

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16638152%20AND%20SRC:MED&resulttype=core&format=json

journals/bmcbi/ZhangSZCLYBC06

20 January 2020

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16638152%20AND%20SRC:MED&resulttype=core&format=json

20 January 2020

PubMed publication ID

16638152

1 reference