Identification of novel components of NAD-utilizing metabolic pathways and prediction of their biochemical functions (Q31049613)

28 June 2017

title

Identification of novel components of NAD-utilizing metabolic pathways and prediction of their biochemical functions (English)

1 reference

Robson Francisco de Souza

28 June 2017

L Aravind

2

0 references

series ordinal

1

object named as

Robson Francisco de Souza

1 reference

28 June 2017

language of work or name

1 reference

7 March 2012

1 reference

28 June 2017

1 reference

28 June 2017

volume

8

1 reference

28 June 2017

issue

6

1 reference

28 June 2017

page(s)

1661-1677

1 reference

Amidoligases with ATP-grasp, glutamine synthetase-like and acetyltransferase-like domains: synthesis of novel metabolites and peptide modifications of proteins

28 June 2017

cites work

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05487F

The prokaryotic antecedents of the ubiquitin-signaling system and the early evolution of ubiquitin-like beta-grasp domains

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05487F

E1- and ubiquitin-like proteins provide a direct link between protein conjugation and sulfur transfer in archaea

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05487F

Natural history of the eukaryotic chromatin protein methylation system

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05487F

Origin and evolution of peptide-modifying dioxygenases and identification of the wybutosine hydroxylase/hydroperoxidase

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05487F

Natural history of the E1-like superfamily: implication for adenylation, sulfur transfer, and ubiquitin conjugation

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05487F

Biosynthesis of the thioquinolobactin siderophore: an interesting variation on sulfur transfer

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05487F

Reconstitution of a new cysteine biosynthetic pathway in Mycobacterium tuberculosis

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05487F

Predicted class-I aminoacyl tRNA synthetase-like proteins in non-ribosomal peptide synthesis

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05487F

Microbial NAD metabolism: lessons from comparative genomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05487F

NAD+ metabolism in health and disease

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05487F

Toward a unified nomenclature for mammalian ADP-ribosyltransferases.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05487F

ADP-ribosylation of arginine

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05487F

Mammalian ADP-ribosyltransferases and ADP-ribosylhydrolases

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05487F

The family of toxin-related ecto-ADP-ribosyltransferases in humans and the mouse

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05487F

The ARTT motif and a unified structural understanding of substrate recognition in ADP-ribosylating bacterial toxins and eukaryotic ADP-ribosyltransferases.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05487F

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05487F

Poly(ADP-ribosyl)ation reactions in the regulation of nuclear functions

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05487F

Cell-free synthesis and characterization of a novel cytotoxic pierisin-like protein from the cabbage butterfly Pieris rapae

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05487F

ADP-ribosylation at R125 gates the P2X7 ion channel by presenting a covalent ligand to its nucleotide binding site

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05487F

Genes coding for the reversible ADP-ribosylation system of dinitrogenase reductase from Rhodospirillum rubrum

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05487F

Reversible ADP-ribosylation is demonstrated to be a regulatory mechanism in prokaryotes by heterologous expression

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05487F

Cloning, sequencing, mutagenesis, and functional characterization of draT and draG genes from Azospirillum brasilense

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05487F

Photorhabdus luminescens toxins ADP-ribosylate actin and RhoA to force actin clustering

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05487F

Rifamycin antibiotic resistance by ADP-ribosylation: Structure and diversity of Arr

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05487F

Evolution of the deaminase fold and multiple origins of eukaryotic editing and mutagenic nucleic acid deaminases from bacterial toxin systems

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05487F

Sirtuin chemical mechanisms

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05487F

Structure of a Sir2 enzyme bound to an acetylated p53 peptide

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05487F

SIR2 family of NAD(+)-dependent protein deacetylases.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05487F

CobB, a new member of the SIR2 family of eucaryotic regulatory proteins, is required to compensate for the lack of nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase activity in cobT mutants during cobalamin biosynthesis i

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05487F

Structure of Sir2Tm bound to a propionylated peptide

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05487F

Analysis of DBC1 and its homologs suggests a potential mechanism for regulation of sirtuin domain deacetylases by NAD metabolites

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05487F

N-lysine propionylation controls the activity of propionyl-CoA synthetase

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05487F

cDNA sequence, protein structure, and chromosomal location of the human gene for poly(ADP-ribose) polymerase

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05487F

The HIRAN domain and recruitment of chromatin remodeling and repair activities to damaged DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05487F

The macro domain is an ADP-ribose binding module

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05487F

The structure and catalytic mechanism of a poly(ADP-ribose) glycohydrolase

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05487F

Orphan macrodomain protein (human C6orf130) is an O-acyl-ADP-ribose deacylase: solution structure and catalytic properties

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05487F

Poly(ADP-ribose) glycohydrolase mediates oxidative and excitotoxic neuronal death

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05487F

An abundance of bacterial ADP-ribosyltransferases--implications for the origin of exotoxins and their human homologues

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05487F

Guilt by association: contextual information in genome analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05487F

DNA ligase and the pyridine nucleotide cycle in Salmonella typhimurium

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05487F

Identification of nicotinamide mononucleotide deamidase of the bacterial pyridine nucleotide cycle reveals a novel broadly conserved amidohydrolase family

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05487F

Transcriptional regulation of NAD metabolism in bacteria: NrtR family of Nudix-related regulators.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05487F

Genomics-driven reconstruction of acinetobacter NAD metabolism: insights for antibacterial target selection

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05487F

Nicotinamide mononucleotide synthetase is the key enzyme for an alternative route of NAD biosynthesis in Francisella tularensis

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05487F

Structure and Function of an ADP-Ribose-Dependent Transcriptional Regulator of NAD Metabolism

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05487F

Comparative genomics of NAD biosynthesis in cyanobacteria.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05487F

A new family of carbon-nitrogen hydrolases

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05487F

The Pfam protein families database

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05487F

A functional homolog of a yeast tRNA splicing enzyme is conserved in higher eukaryotes and in Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05487F

The Nudix hydrolase superfamily

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05487F

Structural basis of severe acute respiratory syndrome coronavirus ADP-ribose-1''-phosphate dephosphorylation by a conserved domain of nsP3.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05487F

bZIP transcription factor zip-2 mediates an early response to Pseudomonas aeruginosa infection in Caenorhabditis elegans

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05487F

Structure and mechanism of activity of the cyclic phosphodiesterase of Appr>p, a product of the tRNA splicing reaction

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05487F

Detection of novel members, structure-function analysis and evolutionary classification of the 2H phosphoesterase superfamily

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05487F

Ribonucleases from T2 family

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05487F

Nucleases: diversity of structure, function and mechanism.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05487F

Crystal structure of the RNA 2'-phosphotransferase from Aeropyrum pernix K1

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05487F

Cyclic 2',3'-phosphates and nontemplated nucleotides at the 3' end of spliceosomal U6 small nuclear RNA's

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05487F

Transient ADP-ribosylation of a 2'-phosphate implicated in its removal from ligated tRNA during splicing in yeast

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05487F

A novel immunity system for bacterial nucleic acid degrading toxins and its recruitment in various eukaryotic and DNA viral systems

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05487F

Prokaryotic toxin-antitoxin stress response loci

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05487F

New connections in the prokaryotic toxin-antitoxin network: relationship with the eukaryotic nonsense-mediated RNA decay system

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05487F

The modes of action of colicins E5 and D, and related cytotoxic tRNases

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05487F

Purification, cloning, and characterization of XendoU, a novel endoribonuclease involved in processing of intron-encoded small nucleolar RNAs in Xenopus laevis

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05487F

The structure of the endoribonuclease XendoU: From small nucleolar RNA processing to severe acute respiratory syndrome coronavirus replication

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05487F

The ADP-ribosyltransferases (gpAlt) of bacteriophages T2, T4, and T6: sequencing of the genes and comparison of their products

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05487F

A widespread family of polymorphic contact-dependent toxin delivery systems in bacteria.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05487F

Interaction proteomics identify NEURL4 and the HECT E3 ligase HERC2 as novel modulators of centrosome architecture

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05487F

The WWE domain: a common interaction module in protein ubiquitination and ADP ribosylation

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05487F

The 39-kDa poly(ADP-ribose) glycohydrolase ARH3 hydrolyzes O-acetyl-ADP-ribose, a product of the Sir2 family of acetyl-histone deacetylases

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05487F

Identification of Regulatory Domains in ADP-ribosyltransferase-1 That Determine Transferase and NAD Glycohydrolase Activities

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05487F

Biosynthesis of riboflavin: cloning, sequencing, mapping, and expression of the gene coding for GTP cyclohydrolase II in Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05487F

A second pathway to degrade pyrimidine nucleic acid precursors in eukaryotes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05487F

Evolutionary genomics of the HAD superfamily: understanding the structural adaptations and catalytic diversity in a superfamily of phosphoesterases and allied enzymes

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05487F

Conformational dynamics in the Acyl-CoA synthetases, adenylation domains of non-ribosomal peptide synthetases, and firefly luciferase

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05487F

Bacillithiol, a new player in bacterial redox homeostasis

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05487F

Mycothiol: synthesis, biosynthesis and biological functions of the major low molecular weight thiol in actinomycetes

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05487F

Trends in protein evolution inferred from sequence and structure analysis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05487F

Data growth and its impact on the SCOP database: new developments

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05487F

Distribution and phylogenies of enzymes of the Embden-Meyerhof-Parnas pathway from archaea and hyperthermophilic bacteria support a gluconeogenic origin of metabolism

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05487F

Crystal structure of a SIR2 homolog-NAD complex

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05487F

Crystal structure of the NAD complex of human deoxyhypusine synthase: an enzyme with a ball-and-chain mechanism for blocking the active site

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05487F

Comparative genomics of transcription factors and chromatin proteins in parasitic protists and other eukaryotes

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05487F

Biosynthesis of thiamin thiazole in eukaryotes: conversion of NAD to an advanced intermediate

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05487F

Cloning, nucleotide sequence, and regulation of Schizosaccharomyces pombe thi4, a thiamine biosynthetic gene

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05487F

The RAGNYA fold: a novel fold with multiple topological variants found in functionally diverse nucleic acid, nucleotide and peptide-binding proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05487F

Presence of a classical RRM-fold palm domain in Thg1-type 3'- 5'nucleic acid polymerases and the origin of the GGDEF and CRISPR polymerase domains

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05487F

The two faces of Alba: the evolutionary connection between proteins participating in chromatin structure and RNA metabolism

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05487F

Reversible ADP-ribosylation as a mechanism of enzyme regulation in procaryotes

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05487F

DNA polymerase beta-like nucleotidyltransferase superfamily: identification of three new families, classification and evolutionary history

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05487F

Evolutionary history of the poly(ADP-ribose) polymerase gene family in eukaryotes

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05487F

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05487F

Dali server: conservation mapping in 3D

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05487F

Kalign2: high-performance multiple alignment of protein and nucleotide sequences allowing external features

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05487F

Protein homology detection by HMM-HMM comparison

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05487F

The HHpred interactive server for protein homology detection and structure prediction

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05487F

FastTree 2--approximately maximum-likelihood trees for large alignments

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05487F

JPred: a consensus secondary structure prediction server

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05487F

21 January 2018

Identifiers

DOI

10.1039/C2MB05487F

1 reference

28 June 2017

1 reference