Strategy for directing combinatorial genome engineering in Escherichia coli. (Q31064145)

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4 February 2020

title

Strategy for directing combinatorial genome engineering in Escherichia coli (English)

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4 February 2020

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4 February 2020

author name string

Nicholas R Sandoval

1

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4 February 2020

Tirzah Y Glebes

3

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4 February 2020

Philippa J Reeder

4

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4 February 2020

Hanna R Aucoin

5

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4 February 2020

Joseph R Warner

6

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4 February 2020

Ryan T Gill

7

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4 February 2020

language of work or name

English

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publication date

11 June 2012

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Proceedings of the National Academy of Sciences of the United States of America

4 February 2020

published in

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4 February 2020

volume

109

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4 February 2020

issue

26

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4 February 2020

page(s)

10540-10545

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Precise manipulation of chromosomes in vivo enables genome-wide codon replacement

4 February 2020

cites work

1 reference

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Probing cellular processes with oligo-mediated recombination and using the knowledge gained to optimize recombineering

21 June 2018

1 reference

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Elucidating acetate tolerance in E. coli using a genome-wide approach

21 June 2018

1 reference

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Rapid profiling of a microbial genome using mixtures of barcoded oligonucleotides

21 June 2018

1 reference

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Synthesis of high-quality libraries of long (150mer) oligonucleotides by a novel depurination controlled process

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3387050

Programming cells by multiplex genome engineering and accelerated evolution

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3387050

In the light of directed evolution: pathways of adaptive protein evolution

21 June 2018

1 reference

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Recombineering: a homologous recombination-based method of genetic engineering

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3387050

Identification and analysis of recombineering functions from Gram-negative and Gram-positive bacteria and their phages

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3387050

Modeling of the bacterial growth curve

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3387050

Production of complex nucleic acid libraries using highly parallel in situ oligonucleotide synthesis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3387050

Enhanced levels of lambda Red-mediated recombinants in mismatch repair mutants

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3387050

Identification of factors influencing strand bias in oligonucleotide-mediated recombination in Escherichia coli

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3387050

Active transport of iron and siderophore antibiotics

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3387050

High efficiency mutagenesis, repair, and engineering of chromosomal DNA using single-stranded oligonucleotides

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3387050

Computational method to reduce the search space for directed protein evolution

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3387050

The population genetics of ecological specialization in evolving Escherichia coli populations

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3387050

One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3387050

Rapid modification of bacterial artificial chromosomes by ET-recombination.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3387050

A new logic for DNA engineering using recombination in Escherichia coli

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3387050

Use of bacteriophage lambda recombination functions to promote gene replacement in Escherichia coli

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3387050

DNA shuffling by random fragmentation and reassembly: in vitro recombination for molecular evolution

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3387050

Molecular basis of valine resistance in Escherichia coli K-12

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3387050

Culture medium for enterobacteria

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3387050

Engineering an enzyme by site-directed mutagenesis to be resistant to chemical oxidation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3387050

High-resolution epitope mapping of hGH-receptor interactions by alanine-scanning mutagenesis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3387050

Improving catalytic function by ProSAR-driven enzyme evolution

21 June 2018

1 reference

Crossref

https://api.crossref.org/works/10.1073%2FPNAS.1206299109

TonB protein appears to transduce energy by shuttling between the cytoplasmic membrane and the outer membrane in Escherichia coli.

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1073%2FPNAS.1206299109

A set of recombineering plasmids for gram-negative bacteria

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3387050

Continuous in vitro evolution of catalytic function

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3387050

DNA cloning by homologous recombination in Escherichia coli

25 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22689973

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

18 Systematic mutational analyses of protein-protein interfaces

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22689973

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.1206299109

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22689973%20AND%20SRC:MED&resulttype=core&format=json

4 February 2020

0 references

1 reference

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4 February 2020

PubMed publication ID

22689973

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22689973%20AND%20SRC:MED&resulttype=core&format=json