Non-targeted UHPLC-MS metabolomic data processing methods: a comparative investigation of normalisation, missing value imputation, transformation and scaling (Q31086494)

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English	Non-targeted UHPLC-MS metabolomic data processing methods: a comparative investigation of normalisation, missing value imputation, transformation and scaling	scientific article

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scholarly article

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Europe PubMed Central

PMC publication ID

16 August 2017

Non-targeted UHPLC-MS metabolomic data processing methods: a comparative investigation of normalisation, missing value imputation, transformation and scaling (English)

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Europe PubMed Central

PMC publication ID

16 August 2017

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based on heuristic

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data processing

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based on heuristic

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object named as

Jasper Engel

2

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8

object named as

Warwick B Dunn

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Europe PubMed Central

PMC publication ID

16 August 2017

7

object named as

Mark R Viant

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Europe PubMed Central

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16 August 2017

4

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Ralf J M Weber

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Europe PubMed Central

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16 August 2017

author name string

Riccardo Di Guida

1

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Europe PubMed Central

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16 August 2017

J William Allwood

3

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Europe PubMed Central

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16 August 2017

Martin R Jones

5

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Europe PubMed Central

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16 August 2017

Ulf Sommer

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Europe PubMed Central

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16 August 2017

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publication date

15 April 2016

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Europe PubMed Central

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16 August 2017

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Europe PubMed Central

PMC publication ID

16 August 2017

12

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Europe PubMed Central

PMC publication ID

16 August 2017

93

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Europe PubMed Central

PMC publication ID

16 August 2017

copyright license

Creative Commons Attribution 4.0 International

15 April 2016

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April 2022 Public Data File from Crossref

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Galaxy-M: a Galaxy workflow for processing and analyzing direct infusion and liquid chromatography mass spectrometry-based metabolomics data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4831991

21 June 2018

Recent developments in sample preparation and data pre-treatment in metabonomics research.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4831991

21 June 2018

A data preprocessing strategy for metabolomics to reduce the mask effect in data analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4831991

21 June 2018

Workflow4Metabolomics: a collaborative research infrastructure for computational metabolomics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4831991

21 June 2018

Comparative LC-MS-based metabolite profiling of the ancient tropical rainforest tree Symphonia globulifera

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4831991

21 June 2018

Effect of sleep deprivation on the human metabolome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4831991

21 June 2018

Influence of missing values substitutes on multivariate analysis of metabolomics data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4831991

21 June 2018

Metabolomics as a potential chemotaxonomical tool: application in the genus Vernonia schreb

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4831991

21 June 2018

MetaboLyzer: a novel statistical workflow for analyzing Postprocessed LC-MS metabolomics data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4831991

21 June 2018

A new approach to untargeted integration of high resolution liquid chromatography-mass spectrometry data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4831991

21 June 2018

Normalizing and integrating metabolomics data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4831991

21 June 2018

State-of-the art data normalization methods improve NMR-based metabolomic analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4831991

21 June 2018

Web-based inference of biological patterns, functions and pathways from metabolomic data using MetaboAnalyst

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4831991

21 June 2018

PeakML/mzMatch: a file format, Java library, R library, and tool-chain for mass spectrometry data analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4831991

21 June 2018

Probabilistic principal component analysis for metabolomic data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4831991

21 June 2018

MZmine 2: modular framework for processing, visualizing, and analyzing mass spectrometry-based molecular profile data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4831991

21 June 2018

1H NMR, GC-EI-TOFMS, and data set correlation for fruit metabolomics: application to spatial metabolite analysis in melon

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4831991

21 June 2018

ProteoWizard: open source software for rapid proteomics tools development

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4831991

21 June 2018

Treatment of missing values for multivariate statistical analysis of gel-based proteomics data.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4831991

21 June 2018

Improved classification accuracy in 1- and 2-dimensional NMR metabolomics data using the variance stabilising generalised logarithm transformation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4831991

21 June 2018

Normalization method for metabolomics data using optimal selection of multiple internal standards

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4831991

21 June 2018

pcaMethods--a bioconductor package providing PCA methods for incomplete data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4831991

21 June 2018

A gentle guide to the analysis of metabolomic data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4831991

21 June 2018

Centering, scaling, and transformations: improving the biological information content of metabolomics data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4831991

21 June 2018

XCMS: processing mass spectrometry data for metabolite profiling using nonlinear peak alignment, matching, and identification

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4831991

21 June 2018

Large-scale human metabolomics studies: a strategy for data (pre-) processing and validation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4831991

21 June 2018

MZmine: toolbox for processing and visualization of mass spectrometry based molecular profile data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4831991

21 June 2018

Fusion of mass spectrometry-based metabolomics data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4831991

21 June 2018

The influence of missing value imputation on detection of differentially expressed genes from microarray data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4831991

21 June 2018

Missing value estimation methods for DNA microarrays

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4831991

21 June 2018

Identifying Important Risk Factors for Survival in Kidney Graft Failure Patients Using Random Survival Forests

1 reference

https://api.crossref.org/works/10.1007%2FS11306-016-1030-9

21 January 2018

Procedures for large-scale metabolic profiling of serum and plasma using gas chromatography and liquid chromatography coupled to mass spectrometry

1 reference

https://api.crossref.org/works/10.1007%2FS11306-016-1030-9

21 January 2018

Metabolic profiling of serum using Ultra Performance Liquid Chromatography and the LTQ-Orbitrap mass spectrometry system

1 reference

https://api.crossref.org/works/10.1007%2FS11306-016-1030-9

21 January 2018

A GC-TOF-MS study of the stability of serum and urine metabolomes during the UK Biobank sample collection and preparation protocols

1 reference

https://api.crossref.org/works/10.1007%2FS11306-016-1030-9

21 January 2018

The metabolome of human placental tissue: investigation of first trimester tissue and changes related to preeclampsia in late pregnancy

1 reference

https://api.crossref.org/works/10.1007%2FS11306-016-1030-9

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1 reference

https://api.crossref.org/works/10.1007%2FS11306-016-1030-9

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Inference and missing data

1 reference

https://api.crossref.org/works/10.1007%2FS11306-016-1030-9

21 January 2018

Missing values in mass spectrometry based metabolomics: an undervalued step in the data processing pipeline

1 reference

https://api.crossref.org/works/10.1007%2FS11306-016-1030-9

21 January 2018

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1 reference

https://api.crossref.org/works/10.1007%2FS11306-016-1030-9

21 January 2018

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1 reference

https://api.crossref.org/works/10.1007%2FS11306-016-1030-9

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4831991

25 November 2018

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1 reference

https://pubmed.ncbi.nlm.nih.gov/27123000

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Investigation of analytical variation in metabonomic analysis using liquid chromatography/mass spectrometry

1 reference

https://pubmed.ncbi.nlm.nih.gov/27123000

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

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10.1007/S11306-016-1030-9

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PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

16 August 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

16 August 2017

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