FastProject: a tool for low-dimensional analysis of single-cell RNA-Seq data (Q31123178)

18 August 2017

FastProject: a tool for low-dimensional analysis of single-cell RNA-Seq data (English)

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18 August 2017

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David DeTomaso

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18 August 2017

Nir Yosef

series ordinal

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23 August 2016

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17

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315

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describes a project that uses

18 August 2017

scikit-learn

object named as

Scikit-Learn

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

cites work

Characterizing transcriptional heterogeneity through pathway and gene set overdispersion analysis

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Single-Cell Genomics Unveils Critical Regulators of Th17 Cell Pathogenicity

21 June 2018

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ZIFA: Dimensionality reduction for zero-inflated single-cell gene expression analysis

21 June 2018

1 reference

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Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets

21 June 2018

1 reference

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Spatial reconstruction of single-cell gene expression data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4995760

Computational analysis of cell-to-cell heterogeneity in single-cell RNA-sequencing data reveals hidden subpopulations of cells

21 June 2018

1 reference

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Single-cell RNA-seq highlights intratumoral heterogeneity in primary glioblastoma

21 June 2018

1 reference

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Single-cell RNA-seq reveals dynamic paracrine control of cellular variation

21 June 2018

1 reference

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Biological Rationale for the Use of PPARγ Agonists in Glioblastoma

21 June 2018

1 reference

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The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells

21 June 2018

1 reference

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Single-cell RNA-seq reveals dynamic, random monoallelic gene expression in mammalian cells

21 June 2018

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From single-cell to cell-pool transcriptomes: stochasticity in gene expression and RNA splicing.

21 June 2018

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Data, information, knowledge and principle: back to metabolism in KEGG

21 June 2018

1 reference

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Accounting for technical noise in single-cell RNA-seq experiments.

21 June 2018

1 reference

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Mesenchymal differentiation mediated by NF-κB promotes radiation resistance in glioblastoma.

21 June 2018

1 reference

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viSNE enables visualization of high dimensional single-cell data and reveals phenotypic heterogeneity of leukemia

21 June 2018

1 reference

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Single-cell transcriptomics reveals bimodality in expression and splicing in immune cells

21 June 2018

1 reference

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Dynamics extracted from fixed cells reveal feedback linking cell growth to cell cycle

21 June 2018

1 reference

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Full-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cells

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4995760

Using gene expression noise to understand gene regulation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4995760

Inverse association of PPARγ agonists use and high grade glioma development

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4995760

Integrated genomic analysis identifies clinically relevant subtypes of glioblastoma characterized by abnormalities in PDGFRA, IDH1, EGFR, and NF1

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4995760

NetPath: a public resource of curated signal transduction pathways

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4995760

Unbiased reconstruction of a mammalian transcriptional network mediating pathogen responses

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4995760

Molecular subclasses of high-grade glioma predict prognosis, delineate a pattern of disease progression, and resemble stages in neurogenesis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4995760

Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4995760

Exploiting tumour hypoxia in cancer treatment

21 June 2018

1 reference

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Human housekeeping genes are compact

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4995760

PPARgamma ligands inhibit primary tumor growth and metastasis by inhibiting angiogenesis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4995760

Gene ontology: tool for the unification of biology

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4995760

KEGG: kyoto encyclopedia of genes and genomes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4995760

A global geometric framework for nonlinear dimensionality reduction

21 June 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2FS12859-016-1176-5

Remarks on Parallel Analysis.

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2FS12859-016-1176-5

10.1186/S12859-016-1176-5

21 January 2018

Identifiers

DOI

1 reference

journals/bmcbi/DeTomasoY16

18 August 2017

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

18 August 2017

PubMed publication ID

27553427

1 reference