Modeling experimental image formation for likelihood-based classification of electron microscopy data (Q31133158)

14 August 2017

Modeling experimental image formation for likelihood-based classification of electron microscopy data (English)

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14 August 2017

1

Sjors H W Scheres

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14 August 2017

Rafael Núñez-Ramírez

2

1 reference

14 August 2017

Yacob Gómez-Llorente

3

1 reference

14 August 2017

Carmen San Martín

4

1 reference

14 August 2017

Paul P B Eggermont

5

1 reference

14 August 2017

José María Carazo

6

1 reference

14 August 2017

1 October 2007

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14 August 2017

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14 August 2017

15

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14 August 2017

10

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14 August 2017

1167-1177

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Visualizing flexibility at molecular resolution: analysis of heterogeneity in single-particle electron microscopy reconstructions

14 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2277044

Functional and structural analysis of the photosynthetic apparatus of Rhodobacter veldkampii.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2277044

FREALIGN: high-resolution refinement of single particle structures

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2277044

PhLP3 modulates CCT-mediated actin and tubulin folding via ternary complexes with substrates

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2277044

Fast maximum-likelihood refinement of electron microscopy images

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2277044

Introduction to 3D reconstruction of macromolecules using single particle electron microscopy

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2277044

Maximum-likelihood multi-reference refinement for electron microscopy images

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2277044

Prepore to pore transition of a cholesterol-dependent cytolysin visualized by electron microscopy

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2277044

Spectral signal-to-noise ratio and resolution assessment of 3D reconstructions

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2277044

Noise bias in the refinement of structures derived from single particles

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2277044

XMIPP: a new generation of an open-source image processing package for electron microscopy.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2277044

A statistical approach to computer processing of cryo-electron microscope images: virion classification and 3-D reconstruction

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2277044

Accurate determination of local defocus and specimen tilt in electron microscopy

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2277044

Pushing the boundaries of molecular replacement with maximum likelihood

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2277044

Maximum-likelihood density modification

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2277044

Cross-validated maximum likelihood enhances crystallographic simulated annealing refinement

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2277044

A new resolution criterion based on spectral signal-to-noise ratios

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2277044

Three-dimensional reconstruction from electron micrographs of disordered specimens. I. Method

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2277044

Functional interactions of the simian virus 40 core origin of replication with flanking regulatory sequences

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2277044

Fuzzy sets-based classification of electron microscopy images of biological macromolecules with an application to ribosomal particles.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2277044

Divergent Substrate-Binding Mechanisms Reveal an Evolutionary Specialization of Eukaryotic Prefoldin Compared to Its Archaeal Counterpart

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2277044

Disentangling conformational states of macromolecules in 3D-EM through likelihood optimization.

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2277044

Polymorphism and double hexamer structure in the archaeal minichromosome maintenance (MCM) helicase from Methanobacterium thermoautotrophicum.

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2277044

A multiresolution approach to orientation assignment in 3D electron microscopy of single particles

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2277044

Characterization of the translocon of the outer envelope of chloroplasts

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2277044

A novel neural network technique for analysis and classification of EM single-particle images.

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2277044

Mapping and fuzzy classification of macromolecular images using self-organizing neural networks.

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2277044

A maximum-likelihood approach to single-particle image refinement.

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2277044

3D reconstruction in electron microscopy using ART with smooth spherically symmetric volume elements (blobs).

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2277044

An immunoaffinity purification procedure for SV40 large T antigen

25 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17937907

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Structural basis for the cooperative assembly of large T antigen on the origin of replication

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17937907

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1016/J.STR.2007.09.003

1 reference

14 August 2017

1 reference

14 August 2017

1 reference