Evaluation and strategy for use of MIRU-VNTRplus, a multifunctional database for online analysis of genotyping data and phylogenetic identification of Mycobacterium tuberculosis complex isolates (Q31159047)

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English	Evaluation and strategy for use of MIRU-VNTRplus, a multifunctional database for online analysis of genotyping data and phylogenetic identification of Mycobacterium tuberculosis complex isolates	scientific article

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scholarly article

1 reference

Europe PubMed Central

16 August 2017

Evaluation and strategy for use of MIRU-VNTRplus, a multifunctional database for online analysis of genotyping data and phylogenetic identification of Mycobacterium tuberculosis complex isolates (English)

1 reference

Europe PubMed Central

16 August 2017

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Mycobacterium tuberculosis

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1 reference

based on heuristic

inferred from title

object named as

Philip Supply

4

0 references

Caroline Allix-Béguec

1

object named as

Caroline Allix-Béguec

1 reference

Europe PubMed Central

16 August 2017

author name string

Dag Harmsen

2

1 reference

Europe PubMed Central

16 August 2017

Thomas Weniger

3

1 reference

Europe PubMed Central

16 August 2017

Stefan Niemann

5

1 reference

Europe PubMed Central

16 August 2017

language of work or name

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publication date

11 June 2008

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Europe PubMed Central

16 August 2017

Journal of Clinical Microbiology

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Europe PubMed Central

16 August 2017

46

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Europe PubMed Central

16 August 2017

2692-2699

1 reference

Europe PubMed Central

16 August 2017

8

1 reference

Europe PubMed Central

16 August 2017

Three-year population-based evaluation of standardized mycobacterial interspersed repetitive-unit-variable-number tandem-repeat typing of Mycobacterium tuberculosis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2519508

21 June 2018

Large sequence polymorphisms classify Mycobacterium tuberculosis strains with ancestral spoligotyping patterns.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2519508

21 June 2018

Global phylogeography of Mycobacterium tuberculosis and implications for tuberculosis product development.

1 reference

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21 June 2018

Assessment of an optimized mycobacterial interspersed repetitive- unit-variable-number tandem-repeat typing system combined with spoligotyping for population-based molecular epidemiology studies of tuberculosis

1 reference

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21 June 2018

Differentiation of tuberculosis strains in a population with mainly Beijing-family strains

1 reference

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21 June 2018

Detecting emerging strains of tuberculosis by using spoligotypes

1 reference

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21 June 2018

Proposal for standardization of optimized mycobacterial interspersed repetitive unit-variable-number tandem repeat typing of Mycobacterium tuberculosis

1 reference

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21 June 2018

Evaluation of the epidemiological relevance of variable-number tandem-repeat genotyping of Mycobacterium bovis and comparison of the method with IS6110 restriction fragment length polymorphism analysis and spoligotyping

1 reference

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21 June 2018

Mycobacterium tuberculosis complex genetic diversity: mining the fourth international spoligotyping database (SpolDB4) for classification, population genetics and epidemiology

1 reference

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21 June 2018

Variable host-pathogen compatibility in Mycobacterium tuberculosis

1 reference

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21 June 2018

Global phylogeny of Mycobacterium tuberculosis based on single nucleotide polymorphism (SNP) analysis: insights into tuberculosis evolution, phylogenetic accuracy of other DNA fingerprinting systems, and recommendations for a minimal standard SNP se

1 reference

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21 June 2018

Evaluation and selection of tandem repeat loci for Streptococcus pneumoniae MLVA strain typing

1 reference

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21 June 2018

Ancient origin and gene mosaicism of the progenitor of Mycobacterium tuberculosis

1 reference

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21 June 2018

Stable association between strains of Mycobacterium tuberculosis and their human host populations

1 reference

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21 June 2018

Evaluation of the polymorphisms associated with tandem repeats for Pseudomonas aeruginosa strain typing

1 reference

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21 June 2018

Snapshot of moving and expanding clones of Mycobacterium tuberculosis and their global distribution assessed by spoligotyping in an international study

1 reference

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21 June 2018

Characterization of a tandem repeat polymorphism in Legionella pneumophila and its use for genotyping.

1 reference

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21 June 2018

DNA fingerprinting of Salmonella enterica subsp. enterica serovar typhimurium with emphasis on phage type DT104 based on variable number of tandem repeat loci

1 reference

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21 June 2018

Ancient horizontal gene transfer

1 reference

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21 June 2018

Microevolution of the direct repeat region of Mycobacterium tuberculosis: implications for interpretation of spoligotyping data.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2519508

21 June 2018

A new evolutionary scenario for the Mycobacterium tuberculosis complex

1 reference

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21 June 2018

Automated high-throughput genotyping for study of global epidemiology of Mycobacterium tuberculosis based on mycobacterial interspersed repetitive units

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2519508

21 June 2018

Identification and characterization of variable-number tandem repeats in the Yersinia pestis genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2519508

21 June 2018

Differentiation of clinical Mycobacterium tuberculosis complex isolates by gyrB DNA sequence polymorphism analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2519508

21 June 2018

Genetic diversity in the Mycobacterium tuberculosis complex based on variable numbers of tandem DNA repeats

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2519508

21 June 2018

Identification of novel intergenic repetitive units in a mycobacterial two-component system operon

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2519508

21 June 2018

Restricted structural gene polymorphism in the Mycobacterium tuberculosis complex indicates evolutionarily recent global dissemination

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2519508

21 June 2018

Simultaneous detection and strain differentiation of Mycobacterium tuberculosis for diagnosis and epidemiology

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2519508

21 June 2018

Predominance of a single genotype of Mycobacterium tuberculosis in countries of east Asia

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2519508

21 June 2018

Strain identification of Mycobacterium tuberculosis by DNA fingerprinting: recommendations for a standardized methodology

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2519508

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An evaluation of genetic distances for use with microsatellite loci.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2519508

21 June 2018

Accuracy of estimated phylogenetic trees from molecular data. II. Gene frequency data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2519508

21 June 2018

Phylogenetic analysis. Models and estimation procedures

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2519508

21 June 2018

The neighbor-joining method: a new method for reconstructing phylogenetic trees

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2519508

21 June 2018

Empirical tests of the reliability of phylogenetic trees constructed with microsatellite DNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2519508

31 October 2018

Identifying Mycobacterium tuberculosis complex strain families using spoligotypes.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2519508

31 October 2018

Utility of fast mycobacterial interspersed repetitive unit-variable number tandem repeat genotyping in clinical mycobacteriological analysis.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2519508

31 October 2018

Evaluation of variable number tandem repeat (VNTR) loci in molecular typing of Mycobacterium bovis isolates from Ireland.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2519508

31 October 2018

Molecular epidemiology of tuberculosis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2519508

31 October 2018

Linkage disequilibrium between minisatellite loci supports clonal evolution of Mycobacterium tuberculosis in a high tuberculosis incidence area

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2519508

31 October 2018

A novel measure of genetic distance for highly polymorphic tandem repeat loci.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2519508

31 October 2018

Against All Odds: Molecular Confirmation of an Implausible Case of Bone Tuberculosis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2519508

31 October 2018

Variable human minisatellite-like regions in the Mycobacterium tuberculosis genome

1 reference

https://pubmed.ncbi.nlm.nih.gov/18550737

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Single-nucleotide polymorphism-based population genetic analysis of Mycobacterium tuberculosis strains from 4 geographic sites

1 reference

https://pubmed.ncbi.nlm.nih.gov/18550737

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A glycolipid of hypervirulent tuberculosis strains that inhibits the innate immune response

1 reference

https://pubmed.ncbi.nlm.nih.gov/18550737

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Evaluation of variable numbers of tandem repeat as molecular epidemiological markers of Mycobacterium tuberculosis in Japan

1 reference

https://pubmed.ncbi.nlm.nih.gov/18550737

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Molecular diversity in Bacillus anthracis

1 reference

https://pubmed.ncbi.nlm.nih.gov/18550737

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Utility of mycobacterial interspersed repetitive unit typing for differentiating Mycobacterium tuberculosis isolates in Wuhan, China

1 reference

https://pubmed.ncbi.nlm.nih.gov/18550737

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1128/JCM.00540-08

1 reference

Europe PubMed Central

16 August 2017

1 reference

Europe PubMed Central

16 August 2017

1 reference

Europe PubMed Central

16 August 2017

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