Characterization of flexible molecules in solution: the RGDW peptide. (Q31940070)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:9878376%20AND%20SRC:MED&resulttype=core&format=json

8 December 2019

title

Characterization of flexible molecules in solution: the RGDW peptide (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:9878376%20AND%20SRC:MED&resulttype=core&format=json

8 December 2019

author name string

Stote RH

series ordinal

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:9878376%20AND%20SRC:MED&resulttype=core&format=json

8 December 2019

publication date

1 December 1998

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:9878376%20AND%20SRC:MED&resulttype=core&format=json

Journal of Molecular Biology

8 December 2019

published in

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:9878376%20AND%20SRC:MED&resulttype=core&format=json

8 December 2019

volume

284

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:9878376%20AND%20SRC:MED&resulttype=core&format=json

8 December 2019

issue

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:9878376%20AND%20SRC:MED&resulttype=core&format=json

8 December 2019

page(s)

1641-1660

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:9878376%20AND%20SRC:MED&resulttype=core&format=json

Cutoff size does strongly influence molecular dynamics results on solvated polypeptides

8 December 2019

cites work

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1006/JMBI.1998.2255

Enhanced conformational sampling in Monte Carlo simulations of proteins: application to a constrained peptide

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1006/JMBI.1998.2255

Sequence requirements for stabilization of a peptide reverse turn in water solution--proline is not essential for stability

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1006/JMBI.1998.2255

Structural and functional aspects of RGD-containing protein antagonists of glycoprotein IIb-IIIa

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1006/JMBI.1998.2255

Stabilization of a type VI turn in a family of linear peptides in water solution

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1006/JMBI.1998.2255

Calibration of ring-current effects in proteins and nucleic acids

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1006/JMBI.1998.2255

New perspectives in cell adhesion: RGD and integrins

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1006/JMBI.1998.2255

THE weighted histogram analysis method for free-energy calculations on biomolecules. I. The method

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1006/JMBI.1998.2255

Dynamical theory of activated processes in globular proteins

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1006/JMBI.1998.2255

All-atom empirical potential for molecular modeling and dynamics studies of proteins

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1006/JMBI.1998.2255

Multidimensional adaptive umbrella sampling: Applications to main chain and side chain peptide conformations

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1006/JMBI.1998.2255

An adaptive umbrella sampling procedure in conformational analysis using molecular dynamics and its application to glycol

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1006/JMBI.1998.2255

Simulation of activation free energies in molecular systems

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1006/JMBI.1998.2255

Crystallization of a designed peptide from a molten globule ensemble

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1006/JMBI.1998.2255

Generalized-ensemble Monte Carlo method for systems with rough energy landscape

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1006/JMBI.1998.2255

Adaptive umbrella sampling: Self-consistent determination of the non-Boltzmann bias

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1006/JMBI.1998.2255

Multicanonical ensemble: A new approach to simulate first-order phase transitions

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1006/JMBI.1998.2255

Comparative study of multicanonical and simulated annealing algorithms in the protein folding problem

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1006/JMBI.1998.2255

New Monte Carlo algorithm: Entropic sampling.

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1006/JMBI.1998.2255

CHARMM: A program for macromolecular energy, minimization, and dynamics calculations

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1006/JMBI.1998.2255

Constant pressure molecular dynamics simulation: The Langevin piston method

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1006/JMBI.1998.2255

MOLMOL: a program for display and analysis of macromolecular structures

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1006/JMBI.1998.2255

Comparison of simple potential functions for simulating liquid water

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1006/JMBI.1998.2255

Molecular dynamics, Langevin and hydrid Monte Carlo simulations in a multicanonical ensemble

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1006/JMBI.1998.2255

1H NMR studies of the solution conformations of an analogue of the C-peptide of ribonuclease A.

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1006/JMBI.1998.2255

Stabilization of an isolated helical capping box in solution by hydrophobic interactions: evidence from the NMR study of bioactive peptides from the C-terminus of human C5a anaphylatoxin

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1006/JMBI.1998.2255

Canonical dynamics: Equilibrium phase-space distributions

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1006/JMBI.1998.2255

Multidimensional free-energy calculations using the weighted histogram analysis method

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1006/JMBI.1998.2255

Structural studies of two antiaggregant RGDW peptides by 1H and 13C NMR

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1006/JMBI.1998.2255

Prediction of peptide conformation by multicanonical algorithm: New approach to the multiple-minima problem

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1006/JMBI.1998.2255

Calibration of the angular dependence of the amide proton-C alpha proton coupling constants, 3JHN alpha, in a globular protein. Use of 3JHN alpha for identification of helical secondary structure

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1006/JMBI.1998.2255

Structure of the RGD protein decorsin: conserved motif and distinct function in leech proteins that affect blood clotting

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1006/JMBI.1998.2255

Probability Distributions for Complex Systems: Adaptive Umbrella Sampling of the Potential Energy

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1006/JMBI.1998.2255

Numerical integration of the cartesian equations of motion of a system with constraints: molecular dynamics of n-alkanes

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1006/JMBI.1998.2255

A unified formulation of the constant temperature molecular dynamics methods

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1006/JMBI.1998.2255

Molecular dynamics of ferrocytochrome c. Magnitude and anisotropy of atomic displacements

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1006/JMBI.1998.2255

The flexibility of the nucleic acids: (II). The calculation of internal energy and applications to mononucleotide repeat DNA

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1006/JMBI.1998.2255

Conformational and helicoidal analysis of the molecular dynamics of proteins: "curves," dials and windows for a 50 psec dynamic trajectory of BPTI

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1006/JMBI.1998.2255

Identifiers

DOI

10.1006/JMBI.1998.2255

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:9878376%20AND%20SRC:MED&resulttype=core&format=json

8 December 2019

1 reference