A homology identification method that combines protein sequence and structure information (Q31946712)

5 July 2017

title

A homology identification method that combines protein sequence and structure information (English)

1 reference

5 July 2017

L Yu

1

1 reference

5 July 2017

J V White

series ordinal

2

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5 July 2017

T F Smith

series ordinal

3

1 reference

5 July 2017

publication date

1 December 1998

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5 July 2017

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5 July 2017

volume

7

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5 July 2017

issue

12

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5 July 2017

page(s)

2499-2510

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Predicting protein structure using hidden Markov models

5 July 2017

cites work

1 reference

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Identifying distantly related protein sequences

21 June 2018

1 reference

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21 June 2018

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21 June 2018

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21 June 2018

1 reference

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An evolutionary treasure: unification of a broad set of amidohydrolases related to urease

21 June 2018

1 reference

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Extracting protein alignment models from the sequence database

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2143896

Protein topology recognition from secondary structure sequences: application of the hidden Markov models to the alpha class proteins.

21 June 2018

1 reference

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New horizons in sequence analysis

21 June 2018

1 reference

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Novel features of serine protease active sites and specificity pockets: sequence analysis and modelling studies of glutamate-specific endopeptidases and epidermolytic toxins.

21 June 2018

1 reference

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Multiple domain protein diagnostic patterns

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2143896

21 June 2018

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21 June 2018

1 reference

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Complete Genome Sequence of the Methanogenic Archaeon, Methanococcus jannaschii

21 June 2018

1 reference

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Structural analysis based on state-space modeling

21 June 2018

1 reference

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Picornaviral 3C cysteine proteinases have a fold similar to chymotrypsin-like serine proteinases

21 June 2018

1 reference

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Hidden Markov models in computational biology. Applications to protein modeling

21 June 2018

1 reference

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21 June 2018

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The SWISS-PROT protein sequence data bank: current status

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2143896

Structural features of a superfamily of zinc-endopeptidases: the metzincins

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2143896

How different amino acid sequences determine similar protein structures: the structure and evolutionary dynamics of the globins

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2143896

Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2143896

Corrections to the amino acid sequence of bovine chymotrypsinogen A.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2143896

Profile analysis: detection of distantly related proteins

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2143896

The high-resolution X-ray crystal structure of the complex formed between subtilisin Carlsberg and eglin c, an elastase inhibitor from the leech Hirudo medicinalis. Structural analysis, subtilisin structure and interface geometry

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2143896

Identification, characterization, and mapping of the Escherichia coli htrA gene, whose product is essential for bacterial growth only at elevated temperatures

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2143896

High-resolution epitope mapping of hGH-receptor interactions by alanine-scanning mutagenesis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2143896

Basic local alignment search tool

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2143896

Scrutineer: a computer program that flexibly seeks and describes motifs and profiles in protein sequence databases.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2143896

Isolation and characterization of a novel extracellular metalloprotease from Bacillus subtilis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2143896

PROSITE: a dictionary of sites and patterns in proteins

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2143896

Automated assembly of protein blocks for database searching

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2143896

The Protein Data Bank: a computer-based archival file for macromolecular structures

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2143896

Analysis of the accuracy and implications of simple methods for predicting the secondary structure of globular proteins

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2143896

Overview of the yeast genome.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2143896

Global optimum protein threading with gapped alignment and empirical pair score functions.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2143896

Protein classification by stochastic modeling and optimal filtering of amino-acid sequences.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2143896

DNA polymerase beta belongs to an ancient nucleotidyltransferase superfamily

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2143896

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2143896

Comparative modeling methods: application to the family of the mammalian serine proteases

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2143896

Using Evolutionary Trees in Protein Secondary Structure Prediction and Other Comparative Sequence Analyses

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2143896

31 October 2018

1 reference

https://pubmed.ncbi.nlm.nih.gov/9865944

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identification of protein sequence homology by consensus template alignment

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/9865944

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Determinants of a protein fold. Unique features of the globin amino acid sequences

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/9865944

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1002/PRO.5560071203

1 reference

5 July 2017

1 reference

5 July 2017

1 reference