The compositional adjustment of amino acid substitution matrices (Q33195777)

23 July 2017

The compositional adjustment of amino acid substitution matrices (English)

1 reference

23 July 2017

Yi-Kuo Yu

1

1 reference

23 July 2017

John C Wootton

series ordinal

2

1 reference

23 July 2017

Stephen F Altschul

series ordinal

3

1 reference

23 July 2017

language of work or name

English

0 references

publication date

8 December 2003

1 reference

Proceedings of the National Academy of Sciences of the United States of America

23 July 2017

1 reference

23 July 2017

100

1 reference

23 July 2017

26

1 reference

23 July 2017

15688-15693

1 reference

Non-symmetric score matrices and the detection of homologous transmembrane proteins

23 July 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307629

A simple model based on mutation and selection explains trends in codon and amino-acid usage and GC composition within and across genomes

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307629

The estimation of statistical parameters for local alignment score distributions.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307629

A global compositional complexity measure for biological sequences: AT-rich and GC-rich genomes encode less complex proteins

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307629

A genomic perspective on protein families

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307629

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307629

A protein alignment scoring system sensitive at all evolutionary distances

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307629

Directional mutation pressure and neutral molecular evolution

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307629

Improved tools for biological sequence comparison

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307629

Methods for assessing the statistical significance of molecular sequence features by using general scoring schemes

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307629

Basic local alignment search tool

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307629

Amino acid substitution matrices from an information theoretic perspective

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307629

The rapid generation of mutation data matrices from protein sequences

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307629

Exhaustive matching of the entire protein sequence database

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307629

Amino acid substitution matrices from protein blocks

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307629

Amino acid substitution during functionally constrained divergent evolution of protein sequences.

28 July 2018

1 reference

Crossref

https://api.crossref.org/works/10.1073%2FPNAS.2533904100

Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1073%2FPNAS.2533904100

PHAT: a transmembrane-specific substitution matrix. Predicted hydrophobic and transmembrane

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1073%2FPNAS.2533904100

Modeling amino acid replacement

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/14663142

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Estimating amino acid substitution models: a comparison of Dayhoff's estimator, the resolvent approach and a maximum likelihood method

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/14663142

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.2533904100

1 reference

23 July 2017

0 references

1 reference

23 July 2017

1 reference