Statistical coil model of the unfolded state: resolving the reconciliation problem (Q33222591)

24 July 2017

Statistical coil model of the unfolded state: resolving the reconciliation problem (English)

1 reference

24 July 2017

0 references

4

Tobin R Sosnick

1 reference

24 July 2017

2

Andrés Colubri

1 reference

24 July 2017

3

Karl F Freed

1 reference

24 July 2017

Abhishek K Jha

1

1 reference

PubMed ID

16131545

24 July 2017

language of work or name

English

0 references

publication date

30 August 2005

1 reference

24 July 2017

6

1 reference

Proceedings of the National Academy of Sciences of the United States of America

inferred from page(s)

published in

1 reference

24 July 2017

102

1 reference

24 July 2017

37

1 reference

24 July 2017

13099-13104

1 reference

Helix, sheet, and polyproline II frequencies and strong nearest neighbor effects in a restricted coil library

24 July 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1201606

Sensitivity of NMR residual dipolar couplings to perturbations in folded and denatured staphylococcal nuclease

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1201606

Reassessing random-coil statistics in unfolded proteins

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1201606

Random-coil behavior and the dimensions of chemically unfolded proteins

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1201606

Origin of the neighboring residue effect on peptide backbone conformation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1201606

A graph-theory algorithm for rapid protein side-chain prediction

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1201606

PISCES: a protein sequence culling server

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1201606

Weak alignment offers new NMR opportunities to study protein structure and dynamics.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1201606

Toward a taxonomy of the denatured state: small angle scattering studies of unfolded proteins

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1201606

Polyproline II structure in a sequence of seven alanine residues.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1201606

NMR structures of biomolecules using field oriented media and residual dipolar couplings

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1201606

Assessment of molecular structure using frame-independent orientational restraints derived from residual dipolar couplings.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1201606

The Flory isolated-pair hypothesis is not valid for polypeptide chains: implications for protein folding

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1201606

Shape anisotropy of a single random-walk polymer

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1201606

Establishing a degree of order: obtaining high-resolution NMR structures from molecular alignment

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1201606

Asparagine and glutamine: using hydrogen atom contacts in the choice of side-chain amide orientation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1201606

The concept of a random coil. Residual structure in peptides and denatured proteins

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1201606

21 June 2018

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1201606

21 June 2018

https://api.crossref.org/works/10.1073%2FPNAS.0506078102

Persistence of native-like topology in a denatured protein in 8 M urea

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0506078102

A new approach for applying residual dipolar couplings as restraints in structure elucidation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0506078102

Effects of denaturants and substitutions of hydrophobic residues on backbone dynamics of denatured staphylococcal nuclease

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0506078102

Direct demonstration of structural similarity between native and denatured eglin C.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0506078102

Short-range, long-range and transition state interactions in the denatured state of ACBP from residual dipolar couplings

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0506078102

Early collapse is not an obligate step in protein folding

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0506078102

Intrinsic phi, psi propensities of amino acids, derived from the coil regions of known structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0506078102

Analysis of main chain torsion angles in proteins: prediction of NMR coupling constants for native and random coil conformations

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0506078102

Intrinsic secondary structure propensities of the amino acids, using statistical phi-psi matrices: comparison with experimental scales.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0506078102

Observation of residual dipolar couplings in short peptides.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0506078102

Molecular alignment of denatured states of staphylococcal nuclease with strained polyacrylamide gels and surfactant liquid crystalline phases

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0506078102

Robustness of the long-range structure in denatured staphylococcal nuclease to changes in amino acid sequence

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0506078102

Structural characterization of unfolded states of apomyoglobin using residual dipolar couplings

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0506078102

Insights into conformation and dynamics of protein GB1 during folding and unfolding by NMR.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0506078102

On the origin of residual dipolar couplings from denatured proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0506078102

Investigations into sequence and conformational dependence of backbone entropy, inter-basin dynamics and the Flory isolated-pair hypothesis for peptides

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0506078102

Relationships between amino acid sequence and backbone torsion angle preferences.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0506078102

Stable conformations of tripeptides in aqueous solution studied by UV circular dichroism spectroscopy

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0506078102

Short sequences of non-proline residues can adopt the polyproline II helical conformation

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0506078102

Reconciling observations of sequence-specific conformational propensities with the generic polymeric behavior of denatured proteins

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1201606

NMR analysis of main-chain conformational preferences in an unfolded fibronectin-binding protein

31 October 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0506078102

Unfolded, yes, but random? Never!

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0506078102

Proteins in 6-M guanidine hydrochloride. Demonstration of random coil behavior

21 January 2018

1 reference

12 December 2020

Further developments of protein secondary structure prediction using information theory. New parameters and consideration of residue pairs

1 reference

12 December 2020

Reassessment of the random coil conformation: vibrational CD study of proline oligopeptides and related polypeptides

1 reference

12 December 2020

Estimation and use of protein backbone angle probabilities

1 reference

12 December 2020

Characterization of long-range structure in the denatured state of staphylococcal nuclease. I. Paramagnetic relaxation enhancement by nitroxide spin labels

1 reference

12 December 2020

Characterization of long-range structure in the denatured state of staphylococcal nuclease. II. Distance restraints from paramagnetic relaxation and calculation of an ensemble of structures

1 reference

12 December 2020

Identifiers

DOI

10.1073/PNAS.0506078102

1 reference

24 July 2017

0 references

1 reference

24 July 2017

1 reference

PubMed ID

16131545