NemaFootPrinter: a web based software for the identification of conserved non-coding genome sequence regions between C. elegans and C. briggsae (Q33229369)

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English	NemaFootPrinter: a web based software for the identification of conserved non-coding genome sequence regions between C. elegans and C. briggsae	scientific article

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scholarly article

1 reference

Europe PubMed Central

PubMed publication ID

24 July 2017

NemaFootPrinter: a web based software for the identification of conserved non-coding genome sequence regions between C. elegans and C. briggsae (English)

1 reference

Europe PubMed Central

PubMed publication ID

24 July 2017

Caenorhabditis elegans

0 references

author name string

Davide Rambaldi

1

1 reference

Europe PubMed Central

PubMed publication ID

24 July 2017

Alessandro Guffanti

2

1 reference

Europe PubMed Central

PubMed publication ID

24 July 2017

Paolo Morandi

3

1 reference

Europe PubMed Central

PubMed publication ID

24 July 2017

Giuseppe Cassata

4

1 reference

Europe PubMed Central

PubMed publication ID

24 July 2017

publication date

1 December 2005

1 reference

Europe PubMed Central

PubMed publication ID

24 July 2017

BMC Bioinformatics

1 reference

Europe PubMed Central

PubMed publication ID

24 July 2017

6 Suppl 4

1 reference

Europe PubMed Central

PubMed publication ID

24 July 2017

S22

1 reference

Europe PubMed Central

PubMed publication ID

24 July 2017

DG-CST (Disease Gene Conserved Sequence Tags), a database of human-mouse conserved elements associated to disease genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1866385

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1866385

21 June 2018

WormBase: a comprehensive data resource for Caenorhabditis biology and genomics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1866385

21 June 2018

Bioinformatics for the 'bench biologist': how to find regulatory regions in genomic DNA.

1 reference

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21 June 2018

CSTminer: a web tool for the identification of coding and noncoding conserved sequence tags through cross-species genome comparison

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1866385

21 June 2018

rVISTA 2.0: evolutionary analysis of transcription factor binding sites

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1866385

21 June 2018

CisOrtho: a program pipeline for genome-wide identification of transcription factor target genes using phylogenetic footprinting

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1866385

21 June 2018

Benchmarking tools for the alignment of functional noncoding DNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1866385

21 June 2018

EnsMart: a generic system for fast and flexible access to biological data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1866385

21 June 2018

The genome sequence of Caenorhabditis briggsae: a platform for comparative genomics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1866385

21 June 2018

Of mice and men: phylogenetic footprinting aids the discovery of regulatory elements

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1866385

21 June 2018

Human-mouse alignments with BLASTZ

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1866385

21 June 2018

Data acquisition, data storage, and data presentation in a modern genetics laboratory

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1866385

21 June 2018

WormBase: network access to the genome and biology of Caenorhabditis elegans

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1866385

21 June 2018

EMBOSS: the European Molecular Biology Open Software Suite

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1866385

21 June 2018

BLAST 2 Sequences, a new tool for comparing protein and nucleotide sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1866385

21 June 2018

Conservation of function and expression of unc-119 from two Caenorhabditis species despite divergence of non-coding DNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1866385

21 June 2018

Comparison of methods for searching protein sequence databases.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1866385

21 June 2018

Identification of common molecular subsequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1866385

21 June 2018

Improved tools for biological sequence comparison

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1866385

21 June 2018

A uniform genetic nomenclature for the nematode Caenorhabditis elegans

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1866385

21 June 2018

Analysis of the constancy of DNA sequences during development and evolution of the nematode Caenorhabditis elegans

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1866385

21 June 2018

Identification of evolutionarily conserved promoter elements and amino acids required for function of the C. elegans beta-catenin homolog BAR-1.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1866385

31 October 2018

Algorithms for phylogenetic footprinting

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1866385

31 October 2018

Reproductive patterns and attempts at reciprocal crossing of Rhabditis elegans maupas, 1900, and Rhabditis briggsae Dougherty and nigon, 1949 (Nematoda: Rhabditidae)

1 reference

https://pubmed.ncbi.nlm.nih.gov/16351749

12 December 2020

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Identifiers

10.1186/1471-2105-6-S4-S22

1 reference

Europe PubMed Central

PubMed publication ID

24 July 2017

DBLP publication ID

journals/bmcbi/RambaldiGMC05

1 reference

DBLP Dataset 2021-01-02

28 January 2021

Dimensions Publication ID

0 references

PMC publication ID

1 reference

Europe PubMed Central

PubMed publication ID

24 July 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

24 July 2017

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