MAGIC-SPP: a database-driven DNA sequence processing package with associated management tools (Q33235719)

24 July 2017

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title

MAGIC-SPP: a database-driven DNA sequence processing package with associated management tools (English)

1 reference

24 July 2017

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Chun Liang

1

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24 July 2017

Feng Sun

2

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24 July 2017

Haiming Wang

3

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24 July 2017

Junfeng Qu

4

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24 July 2017

Robert M Freeman

5

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24 July 2017

Lee H Pratt

6

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24 July 2017

Marie-Michèle Cordonnier-Pratt

7

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24 July 2017

language of work or name

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7 March 2006

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24 July 2017

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24 July 2017

volume

7

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24 July 2017

page(s)

115

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Creative Commons Attribution 2.0 Generic

24 July 2017

copyright license

start time

7 March 2006

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April 2022 Public Data File from Crossref

copyright status

copyrighted

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April 2022 Public Data File from Crossref

describes a project that uses

SQL

1 reference

26 June 2022

https://europepmc.org/article/PMC/PMC1421442

based on heuristic

inferred from PubMed Central ID database lookup

cites work

Design, implementation and maintenance of a model organism database for Arabidopsis thaliana

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1421442

MAGIC database and interfaces: an integrated package for gene discovery and expression

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1421442

ESTAP--an automated system for the analysis of EST data

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1421442

The Ensembl analysis pipeline

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1421442

Pegasys: software for executing and integrating analyses of biological sequences

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1421442

DNA sequence-based "bar codes" for tracking the origins of expressed sequence tags from a maize cDNA library constructed using multiple mRNA sources.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1421442

Biopipe: a flexible framework for protocol-based bioinformatics analysis

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1421442

Massive parallelism, randomness and genomic advances

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1421442

A novel algorithm for computational identification of contaminated EST libraries

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1421442

PipeOnline 2.0: automated EST processing and functional data sorting

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1421442

SSAHA: a fast search method for large DNA databases

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1421442

Automated sequence preprocessing in a large-scale sequencing environment

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1421442

MTT: a software tool for quality control in sequence assembly.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1421442

Base-calling of automated sequencer traces using phred. I. Accuracy assessment

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1421442

Hopper: software for automating data tracking and flow in DNA sequencing.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1421442

The Staden sequence analysis package

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1421442

PartiGene--constructing partial genomes

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1421442

ESTWeb: bioinformatics services for EST sequencing projects

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1421442

DNA sequence quality trimming and vector removal

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1421442

ESTprep: preprocessing cDNA sequence reads

31 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16522212

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2105-7-115

1 reference

journals/bmcbi/LiangSWQJPC06

24 July 2017

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

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1 reference

24 July 2017

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