Construction of phylogenetic trees by kernel-based comparative analysis of metabolic networks (Q33245751)

24 July 2017

title

Construction of phylogenetic trees by kernel-based comparative analysis of metabolic networks (English)

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24 July 2017

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1 reference

S June Oh

1

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24 July 2017

Je-Gun Joung

series ordinal

2

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24 July 2017

Jeong-Ho Chang

series ordinal

3

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24 July 2017

Byoung-Tak Zhang

series ordinal

4

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24 July 2017

publication date

6 June 2006

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24 July 2017

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24 July 2017

volume

7

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24 July 2017

page(s)

284

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A novel algorithm and web-based tool for comparing two alternative phylogenetic trees

24 July 2017

cites work

1 reference

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Phylogenomics and the reconstruction of the tree of life

21 June 2018

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Whole-genome prokaryotic phylogeny

21 June 2018

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A new sequence distance measure for phylogenetic tree construction

21 June 2018

1 reference

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Genome-scale approaches to resolving incongruence in molecular phylogenies

21 June 2018

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Bacterial genomics: potential for antimicrobial drug discovery

21 June 2018

1 reference

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Genome trees and the tree of life

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1534063

A phylogenomic approach to bacterial phylogeny: evidence of a core of genes sharing a common history

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1534063

The global phylogeny of glycolytic enzymes

21 June 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1534063

The Strepsiptera problem: phylogeny of the holometabolous insect orders inferred from 18S and 28S ribosomal DNA sequences and morphology

21 June 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1534063

LIGAND: database of chemical compounds and reactions in biological pathways

21 June 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1534063

Genome trees constructed using five different approaches suggest new major bacterial clades

21 June 2018

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Lateral transfer at the gene and subgenic levels in the evolution of eukaryotic enolase

21 June 2018

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New approaches for reconstructing phylogenies from gene order data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1534063

From complete genomes to measures of substitution rate variability within and between proteins

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1534063

Whole-genome trees based on the occurrence of folds and orthologs: implications for comparing genomes on different levels

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1534063

Whole genome-based phylogenetic analysis of free-living microorganisms

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1534063

Pathway alignment: application to the comparative analysis of glycolytic enzymes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1534063

The genomic tree as revealed from whole proteome comparisons

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1534063

Phylogenetic classification and the universal tree

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1534063

Horizontal gene transfer among genomes: the complexity hypothesis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1534063

KEGG: Kyoto Encyclopedia of Genes and Genomes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1534063

Genomic evidence for two functionally distinct gene classes.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1534063

Archaeal genomics: do archaea have a mixed heritage?

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1534063

TreeView: an application to display phylogenetic trees on personal computers

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1534063

Tempo, mode, the progenote, and the universal root

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1534063

Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1534063

Whole proteome prokaryote phylogeny without sequence alignment: a K-string composition approach

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1534063

Deriving phylogenetic trees from the similarity analysis of metabolic pathways

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1534063

Phylogenetic analysis of metabolic pathways.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1534063

An information-based sequence distance and its application to whole mitochondrial genome phylogeny

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1534063

Evolution of metabolisms: a new method for the comparison of metabolic pathways using genomics information

31 October 2018

1 reference

PubMed

12 December 2020

1 reference

12 December 2020

Comparable system-level organization of Archaea and Eukaryotes

1 reference

PubMed

12 December 2020

SHOT: a web server for the construction of genome phylogenies

1 reference

PubMed

12 December 2020

Identifiers

DOI

10.1186/1471-2105-7-284

1 reference

24 July 2017

DBLP publication ID

journals/bmcbi/OhJCZ06

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

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24 July 2017

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