Retroviral DNA integration: viral and cellular determinants of target-site selection (Q33247467)

24 July 2017

title

Retroviral DNA integration: viral and cellular determinants of target-site selection (English)

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24 July 2017

7

Francis Collins

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Jeremy Leipzig

9

object named as

Jeremy Leipzig

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24 July 2017

Angela Ciuffi

4

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Gregory E. Crawford

6

object named as

Gregory Crawford

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24 July 2017

3

Michael Emerman

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24 July 2017

Mary K Lewinski

1

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24 July 2017

Masahiro Yamashita

2

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24 July 2017

Heather Marshall

5

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24 July 2017

Paul Shinn

8

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24 July 2017

Sridhar Hannenhalli

10

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24 July 2017

Charles C Berry

11

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24 July 2017

Joseph R Ecker

12

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24 July 2017

Frederic D Bushman

13

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24 July 2017

publication date

23 June 2006

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24 July 2017

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24 July 2017

volume

2

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24 July 2017

issue

6

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24 July 2017

page(s)

e60

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Creative Commons Attribution 4.0 International

24 July 2017

copyright license

start time

23 June 2006

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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Integration site selection by HIV-based vectors in dividing and growth-arrested IMR-90 lung fibroblasts.

21 June 2018

1 reference

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A role for LEDGF/p75 in targeting HIV DNA integration

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1480600

The cell cycle independence of HIV infections is not determined by known karyophilic viral elements

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1480600

Genome-wide analysis of chromosomal features repressing human immunodeficiency virus transcription.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1480600

Symmetrical base preferences surrounding HIV-1, avian sarcoma/leukosis virus, and murine leukemia virus integration sites

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1480600

Weak palindromic consensus sequences are a common feature found at the integration target sites of many retroviruses

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1480600

Genome-wide analyses of avian sarcoma virus integration sites

21 June 2018

1 reference

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Lens epithelium-derived growth factor/p75 prevents proteasomal degradation of HIV-1 integrase

21 June 2018

1 reference

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Human cell proteins and human immunodeficiency virus DNA integration

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1480600

Retroviral DNA integration: ASLV, HIV, and MLV show distinct target site preferences

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1480600

LEDGF/p75 determines cellular trafficking of diverse lentiviral but not murine oncoretroviral integrase proteins and is a component of functional lentiviral preintegration complexes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1480600

Capsid is a dominant determinant of retrovirus infectivity in nondividing cells

21 June 2018

1 reference

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Identifying gene regulatory elements by genome-wide recovery of DNase hypersensitive sites

21 June 2018

1 reference

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Targeting survival: integration site selection by retroviruses and LTR-retrotransposons

21 June 2018

1 reference

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LMO2-associated clonal T cell proliferation in two patients after gene therapy for SCID-X1

21 June 2018

1 reference

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Transcription start regions in the human genome are favored targets for MLV integration

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1480600

21 June 2018

Integration by design

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1480600

HIV-1 integrase forms stable tetramers and associates with LEDGF/p75 protein in human cells

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1480600

HIV-1 integration in the human genome favors active genes and local hotspots

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1480600

Human immunodeficiency virus type 1 spinoculation enhances infection through virus binding

21 June 2018

1 reference

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Tagging chromatin with retrotransposons: target specificity of the Saccharomyces Ty5 retrotransposon changes with the chromosomal localization of Sir3p and Sir4p

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1480600

Chromosome structure and human immunodeficiency virus type 1 cDNA integration: centromeric alphoid repeats are a disfavored target

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1480600

Sequence analysis of the human DNA flanking sites of human immunodeficiency virus type 1 integration

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1480600

Integration of murine leukemia virus DNA depends on mitosis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1480600

Passage through mitosis is required for oncoretroviruses but not for the human immunodeficiency virus

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1480600

The human immunodeficiency virus type 1 vpr gene prevents cell proliferation during chronic infection.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1480600

Acceptor sites for retroviral integrations map near DNase I-hypersensitive sites in chromatin

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1480600

Nuclease hypersensitive sites in chromatin

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1480600

Retrovirus integration and chromatin structure: Moloney murine leukemia proviral integration sites map near DNase I-hypersensitive sites

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1480600

Generation of helper-free amphotropic retroviruses that transduce a dominant-acting, methotrexate-resistant dihydrofolate reductase gene

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1480600

CpG-rich islands and the function of DNA methylation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1480600

Retroviral DNA integration directed by HIV integration protein in vitro

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1480600

The IN protein of Moloney murine leukemia virus processes the viral DNA ends and accomplishes their integration in vitro

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1480600

Productive human immunodeficiency virus type 1 (HIV-1) infection of nonproliferating human monocytes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1480600

Changes in growth properties on passage in tissue culture of viruses derived from infectious molecular clones of HIV-1LAI, HIV-1MAL, and HIV-1ELI.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1480600

Human immunodeficiency virus infection of cells arrested in the cell cycle

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1480600

Selective degradation of integrated murine leukemia proviral DNA by deoxyribonucleases

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1480600

HIV integration site selection: targeting in macrophages and the effects of different routes of viral entry.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1480600

Gene therapy put on hold as third child develops cancer

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1480600

A serious adverse event after successful gene therapy for X-linked severe combined immunodeficiency

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1480600

Genomic deletions created upon LINE-1 retrotransposition

31 October 2018

1 reference

12 December 2020

Human l1 retrotransposition is associated with genetic instability in vivo

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12 December 2020

Yeast retrotransposons: finding a nice quiet neighborhood

1 reference

12 December 2020

Mobile DNA elements: controlling transposition with ATP-dependent molecular switches

1 reference

12 December 2020

10.1371/JOURNAL.PPAT.0020060

Identifiers

DOI

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24 July 2017

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24 July 2017

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