Systematic assignment of thermodynamic constraints in metabolic network models (Q33264473)

24 July 2017

Systematic assignment of thermodynamic constraints in metabolic network models (English)

1 reference

24 July 2017

Matthias Heinemann

3

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Sven Panke

object named as

Sven Panke

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2

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author name string

Anne Kümmel

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1

1 reference

24 July 2017

23 November 2006

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24 July 2017

1 reference

24 July 2017

7

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24 July 2017

512

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https://scigraph.springernature.com/pub.10.1186/1471-2105-7-512

24 July 2017

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cites work

Putative regulatory sites unraveled by network-embedded thermodynamic analysis of metabolome data

1 reference

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Accelerating the reconstruction of genome-scale metabolic networks

28 July 2018

1 reference

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Identifying metabolic enzymes with multiple types of association evidence

28 July 2018

1 reference

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MetaCyc: a multiorganism database of metabolic pathways and enzymes

28 July 2018

1 reference

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Evolutionary programming as a platform for in silico metabolic engineering

28 July 2018

1 reference

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Genome-scale thermodynamic analysis of Escherichia coli metabolism

28 July 2018

1 reference

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In silico genome-scale reconstruction and validation of the Staphylococcus aureus metabolic network.

28 July 2018

1 reference

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Uncovering transcriptional regulation of metabolism by using metabolic network topology

28 July 2018

1 reference

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OptStrain: a computational framework for redesign of microbial production systems.

28 July 2018

1 reference

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Comparison of network-based pathway analysis methods

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1664590

A Bayesian method for identifying missing enzymes in predicted metabolic pathway databases

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1664590

The KEGG resource for deciphering the genome

28 July 2018

1 reference

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An expanded genome-scale model of Escherichia coli K-12 (iJR904 GSM/GPR)

28 July 2018

1 reference

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Thirteen years of building constraint-based in silico models of Escherichia coli

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1664590

The Pathway Tools software

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1664590

Energy balance for analysis of complex metabolic networks

28 July 2018

1 reference

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13C metabolic flux analysis

28 July 2018

1 reference

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Metabolic modeling of microbial strains in silico.

28 July 2018

1 reference

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Reduced intracellular ionic strength as the initial trigger for activation of endothelial volume-regulated anion channels

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1664590

Estimation of standard Gibbs energy changes of biotransformations

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1664590

Genetics and intermediary metabolism

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1664590

Succinate Dehydrogenase-dependent Nutritional Requirement for Succinate in Mutants of Escherichia coli K12

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1664590

Genome-scale models of microbial cells: evaluating the consequences of constraints

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1664590

Thermodynamic constraints for biochemical networks.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1664590

From Annotated Genomes to Metabolic Flux Models and Kinetic Parameter Fitting

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1664590

Genome-scale reconstruction of the Saccharomyces cerevisiae metabolic network

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1664590

Metabolic modelling of microbes: the flux-balance approach

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1664590

How reliable are thermodynamic feasibility statements of biochemical pathways?

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1664590

Development of network-based pathway definitions: the need to analyze real metabolic networks

31 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17123434

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

The NhaB Na+/H+ antiporter is essential for intracellular pH regulation under alkaline conditions in Escherichia coli

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17123434

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Ab initio prediction of thermodynamically feasible reaction directions from biochemical network stoichiometry

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17123434

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2105-7-512

1 reference

journals/bmcbi/KummelPH06

24 July 2017

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

24 July 2017

1 reference

PubMed ID

17123434