In silico whole-genome screening for cancer-related single-nucleotide polymorphisms located in human mRNA untranslated regions (Q33268092)

24 July 2017

In silico whole-genome screening for cancer-related single-nucleotide polymorphisms located in human mRNA untranslated regions (English)

1 reference

single-nucleotide polymorphism

24 July 2017

1 reference

inferred from title

whole genome sequencing

1 reference

1 reference

Norma C Gutiérrez

4

0 references

author name string

Abdel Aouacheria

1

1 reference

24 July 2017

Vincent Navratil

2

1 reference

24 July 2017

Ricardo López-Pérez

3

1 reference

24 July 2017

Alexander Churkin

5

1 reference

24 July 2017

Danny Barash

6

1 reference

24 July 2017

Dominique Mouchiroud

7

1 reference

24 July 2017

Christian Gautier

8

1 reference

24 July 2017

language of work or name

English

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publication date

3 January 2007

1 reference

24 July 2017

1 reference

24 July 2017

8

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24 July 2017

2

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Creative Commons Attribution 2.0 Generic

24 July 2017

start time

3 January 2007

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

1 reference

April 2022 Public Data File from Crossref

exact match

https://scigraph.springernature.com/pub.10.1186/1471-2164-8-2

0 references

cites work

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RNAmute: RNA secondary structure mutation analysis tool

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Quantitative comparison of EST libraries requires compensation for systematic biases in cDNA generation

21 June 2018

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Dynamics of transcription and mRNA export

21 June 2018

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In silico whole-genome scanning of cancer-associated nonsynonymous SNPs and molecular characterization of a dynein light chain tumour variant.

21 June 2018

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Post-transcriptional regulation in cancer

21 June 2018

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p21-activated kinase 1: an emerging therapeutic target.

21 June 2018

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Micromanagers of gene expression: the potentially widespread influence of metazoan microRNAs

21 June 2018

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Genome wide in silico SNP-tumor association analysis

21 June 2018

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Searching for cancer-associated gene polymorphisms: promises and obstacles.

21 June 2018

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Polymorphisms in the 5′-untranslated region of the human serotonin receptor 1B (HTR1B) gene affect gene expression

21 June 2018

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The generation and utilization of a cancer-oriented representation of the human transcriptome by using expressed sequence tags

21 June 2018

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Risk of cancer in patients with scleroderma

21 June 2018

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Vienna RNA secondary structure server

21 June 2018

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Mfold web server for nucleic acid folding and hybridization prediction

21 June 2018

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Sequence-based cancer genomics: progress, lessons and opportunities

21 June 2018

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3'UTRs of glutathione peroxidases differentially affect selenium-dependent mRNA stability and selenocysteine incorporation efficiency

21 June 2018

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DigiNorthern, digital expression analysis of query genes based on ESTs.

21 June 2018

1 reference

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Neighboring-nucleotide effects on single nucleotide polymorphisms: a study of 2.6 million polymorphisms across the human genome

21 June 2018

1 reference

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Matricellular proteins: extracellular modulators of cell function

21 June 2018

1 reference

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Gephyrin interacts with Dynein light chains 1 and 2, components of motor protein complexes

21 June 2018

1 reference

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Polymorphisms in the 3'-untranslated region of human and monkey dopamine transporter genes affect reporter gene expression

21 June 2018

1 reference

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In silico screening for tumour-specific expressed sequences in human genome

21 June 2018

1 reference

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Bmf: a proapoptotic BH3-only protein regulated by interaction with the myosin V actin motor complex, activated by anoikis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1774567

Discovery of germ cell-specific transcripts by expressed sequence tag database analysis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1774567

Hypermutation of multiple proto-oncogenes in B-cell diffuse large-cell lymphomas

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1774567

Haplotype variation and linkage disequilibrium in 313 human genes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1774567

Effects of novel polymorphisms in the RAGE gene on transcriptional regulation and their association with diabetic retinopathy

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1774567

Diversity in translational regulation

21 June 2018

1 reference

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21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1774567

SPARC, a matricellular protein that functions in cellular differentiation and tissue response to injury

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1774567

mRNA localization: message on the move

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1774567

Prediction of deleterious human alleles

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1774567

Structural basis of diverse sequence-dependent target recognition by the 8 kDa dynein light chain

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1774567

SPARC, a matricellular protein: at the crossroads of cell-matrix

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1774567

Cancer gene discovery using digital differential display.

21 June 2018

1 reference

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Interaction of the postsynaptic density-95/guanylate kinase domain-associated protein complex with a light chain of myosin-V and dynein

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1774567

Differential expression of osteonectin/SPARC during human prostate cancer progression

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1774567

21 June 2018

The Hallmarks of Cancer

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1774567

SPARC (osteonectin/BM-40).

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1774567

Expression of brain-type glycogen phosphorylase is a potentially novel early biomarker in the carcinogenesis of human colorectal carcinomas

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1774567

Identification of 167 polymorphisms in 88 genes from candidate neurodegeneration pathways

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1774567

Exhaustive mining of EST libraries for genes differentially expressed in normal and tumour tissues

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1774567

Patterns of single-nucleotide polymorphisms in candidate genes for blood-pressure homeostasis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1774567

Characterization of single-nucleotide polymorphisms in coding regions of human genes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1774567

Carcinogenesis of intestinal-type gastric cancer and colorectal cancer is commonly accompanied by expression of brain (fetal)-type glycogen phosphorylase

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1774567

The role of the 5' untranslated region of an mRNA in translation regulation during development

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1774567

The proapoptotic activity of the Bcl-2 family member Bim is regulated by interaction with the dynein motor complex

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1774567

First International SNP Meeting at Skokloster, Sweden, August 1998. Enthusiasm mixed with scepticism about single-nucleotide polymorphism markers for dissecting complex disorders.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1774567

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1774567

ACNUC--a portable retrieval system for nucleic acid sequence databases: logical and physical designs and usage.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1774567

The AU-rich sequences in the 3' untranslated region mediate the increased turnover of interferon mRNA induced by glucocorticoids

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1774567

Kruppel-like factor 6 germ-line mutations are infrequent in Finnish hereditary prostate cancer

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1774567

Genome-wide identification of chromosomal regions of increased tumor expression by transcriptome analysis

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1774567

The Kr√ºppel-like transcription factor 6 gene in sporadic pituitary tumours

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1774567

Association of novel polymorphisms with the expression of SPARC in normal fibroblasts and with susceptibility to scleroderma

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1774567

A novel single-nucleotide polymorphism in the 3'-untranslated region of the human dihydrofolate reductase gene with enhanced expression

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1774567

Bioinformatic and experimental tools for identification of single-nucleotide polymorphisms in genes with a potential role for the development of the insulin resistance syndrome.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1774567

The molecular motor dynein is involved in targeting swallow and bicoid RNA to the anterior pole of Drosophila oocytes.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1774567

RNA localization in development

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1774567

The expression of the secreted protein acidic and rich in cysteine (SPARC) is associated with the neoplastic progression of human melanoma.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1774567

Expression of osteonectin, decorin, and transforming growth factor-beta 1 genes in fibroblasts cultured from patients with systemic sclerosis and morphea.

31 October 2018

1 reference

12 December 2020

Mechanisms of mRNA degradation in eukaryotes

1 reference

12 December 2020

Enhancement of SPARC (osteonectin) synthesis in arthritic cartilage. Increased levels in synovial fluids from patients with rheumatoid arthritis and regulation by growth factors and cytokines in chondrocyte cultures

1 reference

12 December 2020

Terms of attachment: SPARC and tumorigenesis

1 reference

12 December 2020

Internet resources for the functional analysis of 5′ and 3′ untranslated regions of eukaryotic mRNAs

1 reference

12 December 2020

Suppression of SPARC expression by antisense RNA abrogates the tumorigenicity of human melanoma cells

1 reference

12 December 2020

Variations on a theme: cataloging human DNA sequence variation

1 reference

12 December 2020

It's raining SNPs, hallelujah?

1 reference

12 December 2020

Translational control by repressor proteins binding to the 5'UTR of mRNAs

1 reference

12 December 2020

mRNA stability and selenocysteine insertion sequence efficiency rank gastrointestinal glutathione peroxidase high in the hierarchy of selenoproteins

1 reference

12 December 2020

Identifiers

DOI

10.1186/1471-2164-8-2

1 reference

Dimensions Publication ID

24 July 2017

0 references

1 reference

24 July 2017

1 reference