Statistical significance of cis-regulatory modules (Q33269955)

24 July 2017

Statistical significance of cis-regulatory modules (English)

1 reference

24 July 2017

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Andrew D Smith

2

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author name string

Dustin E Schones

series ordinal

1

1 reference

PubMed ID

17241466

24 July 2017

Michael Q Zhang

series ordinal

3

1 reference

24 July 2017

22 January 2007

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24 July 2017

1 reference

24 July 2017

8

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24 July 2017

19

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Creative Commons Attribution 2.0 Generic

24 July 2017

start time

22 January 2007

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

1 reference

April 2022 Public Data File from Crossref

exact match

https://scigraph.springernature.com/pub.10.1186/1471-2105-8-19

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cites work

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Cross-species comparison significantly improves genome-wide prediction of cis-regulatory modules in Drosophila

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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Identification of regulatory regions which confer muscle-specific gene expression.

21 June 2018

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21 June 2018

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Location of enhancers is essential for the imprinting of H19 and Igf2 genes

21 June 2018

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A computational genomics approach to the identification of gene networks

21 June 2018

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Analysis of the distribution of binding sites for a tissue-specific transcription factor in the vertebrate genome

21 June 2018

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Some useful statistical properties of position-weight matrices

21 June 2018

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An enhancer deletion affects both H19 and Igf2 expression

21 June 2018

1 reference

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Information content of binding sites on nucleotide sequences

21 June 2018

1 reference

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Methods for calculating the probabilities of finding patterns in sequences

21 June 2018

1 reference

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On the power of profiles for transcription factor binding site detection.

21 June 2018

1 reference

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Genome-wide computational prediction of transcriptional regulatory modules reveals new insights into human gene expression

31 October 2018

1 reference

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The statistical analysis of spatially clustered genes under the maximum gap criterion.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1796902

Computing the P-value of the information content from an alignment of multiple sequences.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1796902

Prediction of similarly acting cis-regulatory modules by subsequence profiling and comparative genomics in Drosophila melanogaster and D.pseudoobscura.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1796902

Predicting gene expression from sequence.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1796902

Searching for statistically significant regulatory modules.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1796902

Identification of functional clusters of transcription factor binding motifs in genome sequences: the MSCAN algorithm.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1796902

Functional promoter modules can be detected by formal models independent of overall nucleotide sequence similarity.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1796902

The statistical significance of nucleotide position-weight matrix matches.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1796902

Identifying target sites for cooperatively binding factors

31 October 2018

1 reference

12 December 2020

Finding composite regulatory patterns in DNA sequences

1 reference

12 December 2020

Composite Module Analyst: a fitness-based tool for identification of transcription factor binding site combinations

1 reference

12 December 2020

Genes regulated cooperatively by one or more transcription factors and their identification in whole eukaryotic genomes

1 reference

12 December 2020

Gene regulation. A paradigm for precision

1 reference

12 December 2020

Identifiers

DOI

10.1186/1471-2105-8-19

1 reference

journals/bmcbi/SchonesSZ07

24 July 2017

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

24 July 2017

1 reference

PubMed ID

17241466