Enabling a community to dissect an organism: overview of the Neurospora functional genomics project (Q33277980)

25 July 2017

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title

Enabling a community to dissect an organism: overview of the Neurospora functional genomics project (English)

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transcriptional regulatory protein pro-1

25 July 2017

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9

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25 July 2017

Mi Shi

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Dave DeCaprio

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Dave DeCaprio

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Matthew S. Sachs

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Matthew S Sachs

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Katherine A Borkovich

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Katherine A Borkovich

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25 July 2017

Jay C Dunlap

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Matthew R Henn

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Gloria E Turner

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N Louise Glass

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Kevin McCluskey

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Michael Plamann

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Bruce W Birren

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Richard L Weiss

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Jeffrey P Townsend

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Jennifer J Loros

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Mary Anne Nelson

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Randy Lambreghts

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Hildur V Colot

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Gyungsoon Park

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Patrick Collopy

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Carol Ringelberg

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Christopher Crew

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Liubov Litvinkova

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Heather M Hood

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Susan Curilla

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Matthew Crawford

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Michael Koerhsen

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Phil Montgomery

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Lisa Larson

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Matthew Pearson

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Takao Kasuga

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Chaoguang Tian

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Meray Baştürkmen

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Lorena Altamirano

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Junhuan Xu

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1 January 2007

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49-96

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A high-throughput gene knockout procedure for Neurospora reveals functions for multiple transcription factors

25 July 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3673015

Global synthetic-lethality analysis and yeast functional profiling

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3673015

Long-oligomer microarray profiling in Neurospora crassa reveals the transcriptional program underlying biochemical and physiological events of conidial germination

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3673015

Temperature-modulated alternative splicing and promoter use in the Circadian clock gene frequency

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3673015

Cell biology of conidial anastomosis tubes in Neurospora crassa

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3673015

Polarized gene expression determines woronin body formation at the leading edge of the fungal colony

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3673015

Conservation and evolution of cis-regulatory systems in ascomycete fungi

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3673015

The FunCat, a functional annotation scheme for systematic classification of proteins from whole genomes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3673015

Textpresso: an ontology-based information retrieval and extraction system for biological literature

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3673015

An experimental evaluation of a loop versus a reference design for two-channel microarrays

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3673015

Highly efficient gene replacements in Neurospora strains deficient for nonhomologous end-joining

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3673015

Lessons from the genome sequence of Neurospora crassa: tracing the path from genomic blueprint to multicellular organism

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3673015

Multifactorial experimental design and the transitivity of ratios with spotted DNA microarrays

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3673015

Program-specific distribution of a transcription factor dependent on partner transcription factor and MAPK signaling.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3673015

The genome sequence of the filamentous fungus Neurospora crassa

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3673015

Expression profiling of the schizont and trophozoite stages of Plasmodium falciparum with a long-oligonucleotide microarray

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3673015

Bayesian analysis of gene expression levels: statistical quantification of relative mRNA level across multiple strains or treatments

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3673015

Impact of genome-wide functional analyses on cell biology research

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3673015

Design issues for cDNA microarray experiments

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3673015

An algorithm for finding protein-DNA binding sites with applications to chromatin-immunoprecipitation microarray experiments

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3673015

Assessing gene significance from cDNA microarray expression data via mixed models

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3673015

A DNA microarray-based genetic screen for nonhomologous end-joining mutants in Saccharomyces cerevisiae

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3673015

Rapid gene mapping in Caenorhabditis elegans using a high density polymorphism map

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3673015

Analysis of expressed sequence tags from two starvation, time-of-day-specific libraries of Neurospora crassa reveals novel clock-controlled genes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3673015

An SNP map of the human genome generated by reduced representation shotgun sequencing

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3673015

Three new dominant drug resistance cassettes for gene disruption in Saccharomyces cerevisiae

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3673015

Functional characterization of the S. cerevisiae genome by gene deletion and parallel analysis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3673015

DNA arrays for analysis of gene expression

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3673015

Cluster analysis and display of genome-wide expression patterns

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3673015

What determines growth direction in fungal hyphae?

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3673015

Functional analysis of different regions of the positive-acting CYS3 regulatory protein of Neurospora crassa.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3673015

Isolation of quelling-defective (qde) mutants impaired in posttranscriptional transgene-induced gene silencing in Neurospora crassa

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3673015

Expressed sequences from conidial, mycelial, and sexual stages of Neurospora crassa.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3673015

Epigenetic phenomena in filamentous fungi: useful paradigms or repeat-induced confusion?

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3673015

Recombination-mediated PCR-directed plasmid construction in vivo in yeast

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3673015

Circadian clock-controlled genes isolated from Neurospora crassa are late night- to early morning-specific

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3673015

Negative feedback defining a circadian clock: autoregulation of the clock gene frequency

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3673015

Spontaneous mutation at the mtr locus in neurospora: the molecular spectrum in wild-type and a mutator strain.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3673015

Fitting a mixture model by expectation maximization to discover motifs in biopolymers

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3673015

Plasmid-encoded hygromycin B resistance: the sequence of hygromycin B phosphotransferase gene and its expression in Escherichia coli and Saccharomyces cerevisiae

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3673015

Identification and chromosomal distribution of 5S rRNA genes in Neurospora crassa

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3673015

The Neurospora clock gene frequency shares a sequence element with the Drosophila clock gene period

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3673015

Premeiotic instability of repeated sequences in Neurospora crassa

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3673015

Developmental expression of genes involved in conidiation and amino acid biosynthesis in Neurospora crassa

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3673015

A superfamily of Arabidopsis thaliana retrotransposons

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3673015

Reversible inactivation of a foreign gene, hph, during the asexual cycle in Neurospora crassa transformants

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3673015

Biochemical genetics of Neurospora crassa conidial germination

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3673015

Analysis of circadian rhythms in Neurospora: overview of assays and genetic and molecular biological manipulation.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3673015

Genetic mapping with SNP markers in Drosophila.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3673015

Genomics and array technology.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3673015

An efficient method for gene disruption in Neurospora crassa.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3673015

On the Importance of Standardisation in Life Sciences

31 October 2018

1 reference

https://api.crossref.org/works/10.1016%2FS0065-2660%2806%2957002-6

7 January 2021

A simple procedure for the analysis of single nucleotide polymorphisms facilitates map-based cloning in Arabidopsis

1 reference

https://api.crossref.org/works/10.1016%2FS0065-2660%2806%2957002-6

7 January 2021

New vectors for combinatorial deletions in yeast chromosomes and for gap-repair cloning using 'split-marker' recombination

1 reference

https://api.crossref.org/works/10.1016%2FS0065-2660%2806%2957002-6

7 January 2021

Statistical design and the analysis of gene expression microarray data

1 reference

https://api.crossref.org/works/10.1016%2FS0065-2660%2806%2957002-6

7 January 2021

Role for antisense RNA in regulating circadian clock function in Neurospora crassa

1 reference

https://api.crossref.org/works/10.1016%2FS0065-2660%2806%2957002-6

7 January 2021

Conservation of DNA Regulatory Motifs and Discovery of New Motifs in Microbial Genomes

1 reference

https://api.crossref.org/works/10.1016%2FS0065-2660%2806%2957002-6

7 January 2021

General method for plasmid construction using homologous recombination

1 reference

https://api.crossref.org/works/10.1016%2FS0065-2660%2806%2957002-6

7 January 2021

Molecular comparison of the negative-acting nitrogen control gene, nmr, in Neurospora crassa and other Neurospora and fungal species

1 reference

https://api.crossref.org/works/10.1016%2FS0065-2660%2806%2957002-6

7 January 2021

10.1016/S0065-2660(06)57002-6

Identifiers

DOI

1 reference

25 July 2017

1 reference

25 July 2017

1 reference