Using terminal restriction fragment length polymorphism (T-RFLP) to identify mycorrhizal fungi: a methods review. (Q33281899)

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29 December 2019

review article

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title

Using terminal restriction fragment length polymorphism (T-RFLP) to identify mycorrhizal fungi: a methods review (English)

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29 December 2019

author name string

R G FitzJohn

series ordinal

2

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publication date

12 April 2007

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29 December 2019

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29 December 2019

volume

17

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29 December 2019

issue

4

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29 December 2019

page(s)

259-270

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FragMatch--a program for the analysis of DNA fragment data.

29 December 2019

cites work

1 reference

12 December 2020

Wood-inhabiting fungal communities in woody debris of Norway spruce (Picea abies (L.) Karst.), as reflected by sporocarps, mycelial isolations and T-RFLP identification

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12 December 2020

Soil bacterial diversity in a loblolly pine plantation: influence of ectomycorrhizas and fertilization.

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12 December 2020

Interpreting 16S rDNA T-RFLP Data: Application of Self-Organizing Maps and Principal Component Analysis to Describe Community Dynamics and Convergence

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12 December 2020

A novel strategy to extract specific phylogenetic sequence information from community T-RFLP.

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12 December 2020

Contrasting below-ground views of an ectomycorrhizal fungal community.

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12 December 2020

The molecular revolution in ectomycorrhizal ecology: peeking into the black-box.

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12 December 2020

Fungal colonization of shrub willow roots at the forefront of a receding glacier

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12 December 2020

Use of the T-RFLP technique to assess spatial and temporal changes in the bacterial community structure within an agricultural soil planted with transgenic and non-transgenic potato plants

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12 December 2020

Terminal restriction fragment length polymorphism analysis of ribosomal RNA genes to assess changes in fungal community structure in soils

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12 December 2020

Community analysis of arbuscular mycorrhizal fungi associated with Ammophila arenaria in Dutch coastal sand dunes

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12 December 2020

Inter- and intraspecific resolution of nrDNA TRFLP assessed by computer-simulated restriction analysis of a diverse collection of ectomycorrhizal fungi.

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12 December 2020

Rationalizing molecular analysis of field-collected roots for assessing diversity of arbuscular mycorrhizal fungi: to pool, or not to pool, that is the question.

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12 December 2020

Diversity and ecology of soil fungal communities: increased understanding through the application of molecular techniques

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12 December 2020

Fungi associated with hair roots of Rhododendron lochiae (Ericaceae) in an Australian tropical cloud forest revealed by culturing and culture-independent molecular methods

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12 December 2020

Evidence of species interactions within an ectomycorrhizal fungal community

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12 December 2020

Yeasts have a four-fold variation in ribosomal DNA copy number

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12 December 2020

Ectomycorrhizal networks and seedling establishment during early primary succession

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12 December 2020

Assessment of microbial diversity in four southwestern United States soils by 16S rRNA gene terminal restriction fragment analysis

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12 December 2020

Contrasting root associated fungi of three common oak-woodland plant species based on molecular identification: host specificity or non-specific amplification?

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12 December 2020

Combined bromodeoxyuridine immunocapture and terminal-restriction fragment length polymorphism analysis highlights differences in the active soil bacterial metagenome due to Glomus mosseae inoculation or plant species

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12 December 2020

Assessment of fungal diversity using terminal restriction fragment (TRF) pattern analysis: comparison of 18S and ITS ribosomal regions

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12 December 2020

Terminal restriction fragment length polymorphism (T-RFLP): an emerging method for characterizing diversity among homologous populations of amplification products.

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12 December 2020

Co-existing grass species have distinctive arbuscular mycorrhizal communities.

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12 December 2020

Variation between observed and true Terminal Restriction Fragment length is dependent on true TRF length and purine content

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12 December 2020

Evolutionary instability of ectomycorrhizal symbioses in basidiomycetes

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12 December 2020

Terminal restriction fragment patterns: a tool for comparing microbial communities and assessing community dynamics

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12 December 2020

A 'dirty' business: testing the limitations of terminal restriction fragment length polymorphism (TRFLP) analysis of soil fungi.

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12 December 2020

Combining nested PCR and restriction digest of the internal transcribed spacer region to characterize arbuscular mycorrhizal fungi on roots from the field

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12 December 2020

Diversity of an ectomycorrhizal fungal community studied by a root tip and total soil DNA approach

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12 December 2020

Characterization of microbial diversity by determining terminal restriction fragment length polymorphisms of genes encoding 16S rRNA.

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12 December 2020

Molecular identification of ectomycorrhizal mycelium in soil horizons

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12 December 2020

Spatial separation of litter decomposition and mycorrhizal nitrogen uptake in a boreal forest

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12 December 2020

Distinct mycorrhizal communities on new and established hosts in a transitional tropical plant community

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12 December 2020

Fine-scale distribution of pine ectomycorrhizas and their extramatrical mycelium

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12 December 2020

Terminal restriction fragment length polymorphism data analysis for quantitative comparison of microbial communities

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12 December 2020

Microbial diversity in the deep sea and the underexplored "rare biosphere"

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12 December 2020

Web-based phylogenetic assignment tool for analysis of terminal restriction fragment length polymorphism profiles of microbial communities

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12 December 2020

Influence of elevated CO(2) on the fungal community in a coastal scrub oak forest soil investigated with terminal-restriction fragment length polymorphism analysis

1 reference

12 December 2020

Soil fungal community structure in a temperate upland grassland soil.

1 reference

12 December 2020

10.1007/S00572-007-0129-2

Identifiers

DOI

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17429700%20AND%20SRC:MED&resulttype=core&format=json

Dimensions Publication ID

29 December 2019

1014011901

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