Hinge Atlas: relating protein sequence to sites of structural flexibility (Q33285427)

25 July 2017

Hinge Atlas: relating protein sequence to sites of structural flexibility (English)

1 reference

25 July 2017

5

Mark B Gerstein

1 reference

25 July 2017

Samuel C Flores

1

1 reference

25 July 2017

Long J Lu

series ordinal

2

1 reference

25 July 2017

Julie Yang

series ordinal

3

1 reference

25 July 2017

Nicholas Carriero

series ordinal

4

1 reference

25 July 2017

22 May 2007

1 reference

25 July 2017

1 reference

25 July 2017

8

1 reference

25 July 2017

167

1 reference

https://scigraph.springernature.com/pub.10.1186/1471-2105-8-167

25 July 2017

0 references

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28 July 2018

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28 July 2018

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28 July 2018

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28 July 2018

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28 July 2018

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Rapid protein domain assignment from amino acid sequence using predicted secondary structure

28 July 2018

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28 July 2018

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Normal mode analysis of macromolecular motions in a database framework: developing mode concentration as a useful classifying statistic

28 July 2018

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Correlations among amino acid sites in bHLH protein domains: an information theoretic analysis

28 July 2018

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28 July 2018

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28 July 2018

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How representative are the known structures of the proteins in a complete genome? A comprehensive structural census

28 July 2018

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A database of macromolecular motions

28 July 2018

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Quantitative specificity of the Mnt repressor

28 July 2018

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Direct evaluation of thermal fluctuations in proteins using a single-parameter harmonic potential

28 July 2018

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VMD: visual molecular dynamics

28 July 2018

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C alpha-based torsion angles: a simple tool to analyze protein conformational changes

28 July 2018

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NMR solution structure of calcium-saturated skeletal muscle troponin C

28 July 2018

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CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

28 July 2018

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28 July 2018

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A procedure for detecting structural domains in proteins

28 July 2018

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28 July 2018

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Continuous and discontinuous domains: an algorithm for the automatic generation of reliable protein domain definitions

28 July 2018

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Structural domains in proteins and their role in the dynamics of protein function

28 July 2018

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The interpretation of protein structures: Estimation of static accessibility

28 July 2018

1 reference

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Prediction of protein secondary structure and active sites using the alignment of homologous sequences

28 July 2018

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28 July 2018

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Basic local alignment search tool

28 July 2018

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Conformational properties of amino acid residues in globular proteins

28 July 2018

1 reference

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Analysis of the accuracy and implications of simple methods for predicting the secondary structure of globular proteins

28 July 2018

1 reference

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Automatic prediction of protein domains from sequence information using a hybrid learning system

28 July 2018

1 reference

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Tools and databases to analyze protein flexibility; approaches to mapping implied features onto sequences

31 October 2018

1 reference

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Exhaustive enumeration of protein domain families.

31 October 2018

1 reference

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Flexible protein alignment and hinge detection

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1913541

Protein unfolding: rigidity lost

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1913541

Protein flexibility predictions using graph theory

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1913541

Alignment of flexible protein structures.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1913541

The morph server: a standardized system for analyzing and visualizing macromolecular motions in a database framework

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1913541

Removing near-neighbour redundancy from large protein sequence collections.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1913541

Domain assignment for protein structures using a consensus approach: characterization and analysis

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1913541

Protein domain movements: detection of rigid domains and visualization of hinges in comparisons of atomic coordinates.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1913541

Knowledge-based protein secondary structure assignment

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1913541

Structural mechanisms for domain movements in proteins

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1913541

Protein flexibility and dynamics using constraint theory

31 October 2018

1 reference

12 December 2020

Improvements in the analysis of domain motions in proteins from conformational change: DynDom version 1.50

1 reference

12 December 2020

Identifying protein folding cores from the evolution of flexible regions during unfolding

1 reference

12 December 2020

Incorporating protein flexibility in structure-based drug discovery: using HIV-1 protease as a test case

1 reference

12 December 2020

Identifiers

DOI

10.1186/1471-2105-8-167

1 reference

journals/bmcbi/FloresLYCG07

25 July 2017

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

25 July 2017

1 reference