Characterization and modeling of the Haemophilus influenzae core and supragenomes based on the complete genomic sequences of Rd and 12 clinical nontypeable strains (Q33286770)

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English	Characterization and modeling of the Haemophilus influenzae core and supragenomes based on the complete genomic sequences of Rd and 12 clinical nontypeable strains	scientific article

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scholarly article

1 reference

Europe PubMed Central

25 July 2017

Characterization and modeling of the Haemophilus influenzae core and supragenomes based on the complete genomic sequences of Rd and 12 clinical nontypeable strains (English)

1 reference

Europe PubMed Central

25 July 2017

Haemophilus influenzae

object named as

Haemophilus influenzae

1 reference

based on heuristic

inferred from title

object named as

Benjamin Janto

3

0 references

Garth D Ehrlich

object named as

Garth D Ehrlich

8

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author name string

Justin S Hogg

1

1 reference

Europe PubMed Central

25 July 2017

Fen Z Hu

2

1 reference

Europe PubMed Central

25 July 2017

Robert Boissy

4

1 reference

Europe PubMed Central

25 July 2017

Jay Hayes

5

1 reference

Europe PubMed Central

25 July 2017

Randy Keefe

6

1 reference

Europe PubMed Central

25 July 2017

J Christopher Post

7

1 reference

Europe PubMed Central

25 July 2017

publication date

1 January 2007

1 reference

Europe PubMed Central

25 July 2017

1 reference

Europe PubMed Central

25 July 2017

8

1 reference

Europe PubMed Central

25 July 2017

6

1 reference

Europe PubMed Central

25 July 2017

R103

1 reference

Europe PubMed Central

25 July 2017

describes a project that uses

object named as

MUMmer

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

https://scigraph.springernature.com/pub.10.1186/gb-2007-8-6-r103

0 references

Extensive genomic plasticity in Pseudomonas aeruginosa revealed by identification and distribution studies of novel genes among clinical isolates

1 reference

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21 June 2018

Direct detection of bacterial biofilms on the middle-ear mucosa of children with chronic otitis media

1 reference

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21 June 2018

Characterization, distribution, and expression of novel genes among eight clinical isolates of Streptococcus pneumoniae

1 reference

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21 June 2018

Genome analysis of multiple pathogenic isolates of Streptococcus agalactiae: implications for the microbial "pan-genome"

1 reference

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21 June 2018

Characterization of genetic and phenotypic diversity of invasive nontypeable Haemophilus influenzae

1 reference

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21 June 2018

Genome sequencing in microfabricated high-density picolitre reactors

1 reference

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21 June 2018

Bacterial plurality as a general mechanism driving persistence in chronic infections

1 reference

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21 June 2018

Codon usage comparison of novel genes in clinical isolates of Haemophilus influenzae

1 reference

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21 June 2018

Genomic Sequence of an Otitis Media Isolate of Nontypeable Haemophilus influenzae: Comparative Study with H. influenzae Serotype d, Strain KW20

1 reference

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21 June 2018

Identification, distribution, and expression of novel genes in 10 clinical isolates of nontypeable Haemophilus influenzae.

1 reference

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21 June 2018

Haemophilus influenzae: genetic variability and natural selection to identify virulence factors

1 reference

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21 June 2018

Projector: automatic contig mapping for gap closure purposes.

1 reference

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21 June 2018

Gene transfer occurs with enhanced efficiency in biofilms and induces enhanced stabilisation of the biofilm structure

1 reference

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21 June 2018

Horizontal transfer of the gene encoding outer membrane protein P2 of nontypeable Haemophilus influenzae, in a patient with chronic obstructive pulmonary disease

1 reference

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21 June 2018

Characterization of encapsulated and noncapsulated Haemophilus influenzae and determination of phylogenetic relationships by multilocus sequence typing

1 reference

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21 June 2018

Multiple sequence alignment using partial order graphs

1 reference

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21 June 2018

Mucosal biofilm formation on middle-ear mucosa in the chinchilla model of otitis media

1 reference

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21 June 2018

Natural conjugative plasmids induce bacterial biofilm development

1 reference

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21 June 2018

Regulation of competence for genetic transformation in Streptococcus pneumoniae: a link between quorum sensing and DNA processing genes

1 reference

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21 June 2018

Primer3 on the WWW for general users and for biologist programmers

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2394751

21 June 2018

Identification of a new regulator in Streptococcus pneumoniae linking quorum sensing to competence for genetic transformation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2394751

21 June 2018

Alignment of whole genomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2394751

21 June 2018

Consed: a graphical tool for sequence finishing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2394751

21 June 2018

Base-calling of automated sequencer traces using phred. II. Error probabilities

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2394751

21 June 2018

Base-calling of automated sequencer traces using phred. I. Accuracy assessment

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2394751

21 June 2018

A genomic perspective on protein families

1 reference

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21 June 2018

Nonencapsulated Haemophilus influenzae in Aboriginal infants with otitis media: prolonged carriage of P2 porin variants and evidence for horizontal P2 gene transfer

1 reference

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21 June 2018

Carriage of multiple ribotypes of non-encapsulated Haemophilus influenzae in aboriginal infants with otitis media

1 reference

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21 June 2018

Ordered restriction maps of Saccharomyces cerevisiae chromosomes constructed by optical mapping

1 reference

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21 June 2018

fastDNAmL: a tool for construction of phylogenetic trees of DNA sequences using maximum likelihood.

1 reference

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21 June 2018

Whole-genome random sequencing and assembly of Haemophilus influenzae Rd

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2394751

21 June 2018

Long PCR-ribotyping of nontypeable Haemophilus influenzae

1 reference

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21 June 2018

Evolutionary trees from DNA sequences: A maximum likelihood approach

1 reference

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21 June 2018

Genetic relationships of serologically nontypable and serotype b strains of Haemophilus influenzae

1 reference

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21 June 2018

Improved tools for biological sequence comparison

1 reference

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21 June 2018

Basic local alignment search tool

1 reference

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21 June 2018

Cloning, expression, and DNA sequence analysis of genes encoding nontypeable Haemophilus influenzae high-molecular-weight surface-exposed proteins related to filamentous hemagglutinin of Bordetella pertussis

1 reference

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21 June 2018

Haemophilus influenzae forms biofilms on airway epithelia: implications in cystic fibrosis

1 reference

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1 reference

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31 October 2018

Diversity and sharing of Haemophilus influenzae strains colonizing healthy children attending day-care centers

1 reference

https://pubmed.ncbi.nlm.nih.gov/17550610

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Molecular analysis of bacterial pathogens in otitis media with effusion

1 reference

https://pubmed.ncbi.nlm.nih.gov/17550610

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Frequency and distribution of DNA uptake signal sequences in the Haemophilus influenzae Rd genome

1 reference

https://pubmed.ncbi.nlm.nih.gov/17550610

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Gene transfer in bacterial biofilms

1 reference

https://pubmed.ncbi.nlm.nih.gov/17550610

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Biofilm-induced gene expression and gene transfer

1 reference

https://pubmed.ncbi.nlm.nih.gov/17550610

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

In situ quantification of gene transfer in biofilms

1 reference

https://pubmed.ncbi.nlm.nih.gov/17550610

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Simultaneous Respiratory Tract Colonization by Multiple Strains of NontypeableHaemophilus influenzaein Chronic Obstructive Pulmonary Disease: Implications for Antibiotic Therapy

1 reference

https://pubmed.ncbi.nlm.nih.gov/17550610

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Antibiotic stress induces genetic transformability in the human pathogen Streptococcus pneumoniae

1 reference

https://pubmed.ncbi.nlm.nih.gov/17550610

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1186/GB-2007-8-6-R103

1 reference

Europe PubMed Central

25 July 2017

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1 reference

Europe PubMed Central

25 July 2017

1 reference

Europe PubMed Central

25 July 2017

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