Progressive multiple sequence alignments from triplets (Q33290873)

25 July 2017

Progressive multiple sequence alignments from triplets (English)

1 reference

25 July 2017

1 reference

2

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25 July 2017

Matthias Kruspe

1

1 reference

25 July 2017

15 July 2007

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25 July 2017

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25 July 2017

8

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25 July 2017

254

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Creative Commons Attribution 2.0 Generic

25 July 2017

start time

15 July 2007

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

1 reference

April 2022 Public Data File from Crossref

exact match

https://scigraph.springernature.com/pub.10.1186/1471-2105-8-254

0 references

cites work

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Consistency of the neighbor-net algorithm

21 June 2018

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Inferring noncoding RNA families and classes by means of genome-scale structure-based clustering

21 June 2018

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STRAL: progressive alignment of non-coding RNA using base pairing probability vectors in quadratic time

21 June 2018

1 reference

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The expansion of the metazoan microRNA repertoire

21 June 2018

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21 June 2018

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MARNA: multiple alignment and consensus structure prediction of RNAs based on sequence structure comparisons.

21 June 2018

1 reference

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A benchmark of multiple sequence alignment programs upon structural RNAs

21 June 2018

1 reference

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ProbCons: Probabilistic consistency-based multiple sequence alignment

21 June 2018

1 reference

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Fast and reliable prediction of noncoding RNAs

21 June 2018

1 reference

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Pairwise local structural alignment of RNA sequences with sequence similarity less than 40%

21 June 2018

1 reference

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Rfam: annotating non-coding RNAs in complete genomes

21 June 2018

1 reference

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MUSCLE: a multiple sequence alignment method with reduced time and space complexity

21 June 2018

1 reference

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Neighbor-net: an agglomerative method for the construction of phylogenetic networks

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1948021

MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1948021

Secondary structure prediction for aligned RNA sequences

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1948021

Dynalign: an algorithm for finding the secondary structure common to two RNA sequences

21 June 2018

1 reference

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T-Coffee: A novel method for fast and accurate multiple sequence alignment

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1948021

BAliBASE: a benchmark alignment database for the evaluation of multiple alignment programs

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1948021

Rose: generating sequence families.

21 June 2018

1 reference

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SplitsTree: analyzing and visualizing evolutionary data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1948021

On the complexity of multiple sequence alignment

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1948021

Improving the practical space and time efficiency of the shortest-paths approach to sum-of-pairs multiple sequence alignment.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1948021

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1948021

The alignment of sets of sequences and the construction of phyletic trees: an integrated method

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1948021

A general method applicable to the search for similarities in the amino acid sequence of two proteins

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1948021

The neighbor-joining method: a new method for reconstructing phylogenetic trees

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1948021

Optimal alignments in linear space

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1948021

Progressive sequence alignment as a prerequisite to correct phylogenetic trees

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1948021

A tool for multiple sequence alignment

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1948021

The equilibrium partition function and base pair binding probabilities for RNA secondary structure

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1948021

Split decomposition: a new and useful approach to phylogenetic analysis of distance data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1948021

Progressive multiple alignment using sequence triplet optimizations and three-residue exchange costs.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1948021

A sequence alignment algorithm with an arbitrary gap penalty function.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1948021

Multiple sequence alignment with the Divide-and-Conquer method

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1948021

RNA multi-structure landscapes. A study based on temperature dependent partition functions.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1948021

An improved algorithm for matching biological sequences.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1948021

Alignment of three biological sequences with an efficient traceback procedure

31 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17631683

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2105-8-254

1 reference

25 July 2017

journals/bmcbi/KruspeS07

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

25 July 2017

1 reference

PubMed ID

17631683