Modular co-evolution of metabolic networks (Q33295231)

25 July 2017

Modular co-evolution of metabolic networks (English)

1 reference

25 July 2017

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1 reference

Jing Zhao

1

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author name string

Guo-Hui Ding

2

1 reference

25 July 2017

Lin Tao

3

1 reference

25 July 2017

Hong Yu

4

1 reference

25 July 2017

Zhong-Hao Yu

5

1 reference

25 July 2017

Jian-Hua Luo

6

1 reference

25 July 2017

Zhi-Wei Cao

7

1 reference

25 July 2017

Yi-Xue Li

8

1 reference

25 July 2017

27 August 2007

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25 July 2017

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25 July 2017

8

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25 July 2017

311

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https://scigraph.springernature.com/pub.10.1186/1471-2105-8-311

25 July 2017

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21 June 2018

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21 June 2018

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A metabolic network in the evolutionary context: multiscale structure and modularity

21 June 2018

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21 June 2018

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Extraction of phylogenetic network modules from the metabolic network

21 June 2018

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21 June 2018

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The origins and evolution of functional modules: lessons from protein complexes

21 June 2018

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Identification and analysis of evolutionarily cohesive functional modules in protein networks

21 June 2018

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Stable evolutionary signal in a yeast protein interaction network

21 June 2018

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21 June 2018

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Evolution of metabolic networks by gain and loss of enzymatic reaction in eukaryotes

21 June 2018

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Preferential attachment in the evolution of metabolic networks

21 June 2018

1 reference

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Functional cartography of complex metabolic networks

21 June 2018

1 reference

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Hierarchical structure and modules in the Escherichia coli transcriptional regulatory network revealed by a new top-down approach

21 June 2018

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Hierarchical thinking in network biology: the unbiased modularization of biochemical networks.

21 June 2018

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Bow ties, metabolism and disease

21 June 2018

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Modular decomposition of protein-protein interaction networks

21 June 2018

1 reference

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Finding and evaluating community structure in networks

21 June 2018

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Quantifying modularity in the evolution of biomolecular systems

21 June 2018

1 reference

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Genome evolution reveals biochemical networks and functional modules

21 June 2018

1 reference

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Protein complexes and functional modules in molecular networks

21 June 2018

1 reference

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A simple dependence between protein evolution rate and the number of protein-protein interactions

21 June 2018

1 reference

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Modular organization of cellular networks

21 June 2018

1 reference

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Reconstruction of metabolic networks from genome data and analysis of their global structure for various organisms

21 June 2018

1 reference

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Hierarchical organization of modularity in metabolic networks

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2001200

Community structure in social and biological networks

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2001200

Probabilistic clustering of sequences: inferring new bacterial regulons by comparative genomics

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2001200

Specificity and stability in topology of protein networks

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2001200

Evolutionary rate in the protein interaction network

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2001200

Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry

21 June 2018

1 reference

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Functional organization of the yeast proteome by systematic analysis of protein complexes

21 June 2018

1 reference

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LIGAND: database of chemical compounds and reactions in biological pathways

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2001200

MIPS: a database for genomes and protein sequences

21 June 2018

1 reference

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Pathway databases: a case study in computational symbolic theories

21 June 2018

1 reference

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RegulonDB (version 3.2): transcriptional regulation and operon organization in Escherichia coli K-12

21 June 2018

1 reference

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LIGAND: chemical database of enzyme reactions

21 June 2018

1 reference

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WIT: integrated system for high-throughput genome sequence analysis and metabolic reconstruction

21 June 2018

1 reference

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KEGG: kyoto encyclopedia of genes and genomes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2001200

From molecular to modular cell biology

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2001200

Pathway alignment: application to the comparative analysis of glycolytic enzymes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2001200

Systematic determination of genetic network architecture

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2001200

Variation and evolution of the citric-acid cycle: a genomic perspective.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2001200

LIGAND: chemical database for enzyme reactions.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2001200

Computing genetic similarity coefficients from RAPD data: the effects of PCR artifacts

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2001200

Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2001200

Currency and commodity metabolites: their identification and relation to the modularity of metabolic networks.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2001200

Modularity and evolutionary constraint on proteins

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2001200

Extraction of phylogenetic network modules from prokayrote metabolic pathways.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2001200

Hierarchical analysis of dependency in metabolic networks

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2001200

Subnetwork hierarchies of biochemical pathways.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2001200

Revealing modular organization in the yeast transcriptional network.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2001200

Genome-scale Gene Expression Analysis and Pathway Reconstruction in KEGG

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2001200

The coordinated evolution of yeast proteins is constrained by functional modularity

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2001200

Decomposition of metabolic network into functional modules based on the global connectivity structure of reaction graph

31 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17723146

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Core-periphery organization of complex networks

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17723146

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2105-8-311

1 reference

journals/bmcbi/ZhaoDTYYLCL07

25 July 2017

1 reference

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

25 July 2017

1 reference