Transposable element distribution, abundance and role in genome size variation in the genus Oryza (Q33295461)

25 July 2017

Transposable element distribution, abundance and role in genome size variation in the genus Oryza (English)

1 reference

25 July 2017

8

1 reference

25 July 2017

Andrea Zuccolo

1

1 reference

25 July 2017

Aswathy Sebastian

2

1 reference

25 July 2017

Jayson Talag

3

1 reference

25 July 2017

Yeisoo Yu

4

1 reference

25 July 2017

HyeRan Kim

5

1 reference

25 July 2017

Kristi Collura

6

1 reference

25 July 2017

Dave Kudrna

7

1 reference

25 July 2017

29 August 2007

1 reference

25 July 2017

BMC Evolutionary Biology

1 reference

25 July 2017

7

1 reference

25 July 2017

152

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https://scigraph.springernature.com/pub.10.1186/1471-2148-7-152

25 July 2017

0 references

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Doubling genome size without polyploidization: dynamics of retrotransposition-driven genomic expansions in Oryza australiensis, a wild relative of rice

21 June 2018

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Differential lineage-specific amplification of transposable elements is responsible for genome size variation in Gossypium

21 June 2018

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Significant expansion of Vicia pannonica genome size mediated by amplification of a single type of giant retroelement

21 June 2018

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Self-synthesizing DNA transposons in eukaryotes

21 June 2018

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The Oryza bacterial artificial chromosome library resource: construction and analysis of 12 deep-coverage large-insert BAC libraries that represent the 10 genome types of the genus Oryza

21 June 2018

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The oryza map alignment project: the golden path to unlocking the genetic potential of wild rice species

21 June 2018

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The map-based sequence of the rice genome

21 June 2018

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The genetic organization of chromosomes

21 June 2018

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Repbase Update, a database of eukaryotic repetitive elements

21 June 2018

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LTR retrotransposons and flowering plant genome size: emergence of the increase/decrease model

21 June 2018

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Polyploidy and genome evolution in plants

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2041954

Estimation of the nuclear DNA content of gossypium species

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2041954

Genome evolution in the genus Sorghum (Poaceae)

21 June 2018

1 reference

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Mechanisms of recent genome size variation in flowering plants

21 June 2018

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21 June 2018

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Analyses of LTR-retrotransposon structures reveal recent and rapid genomic DNA loss in rice

21 June 2018

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MUSCLE: multiple sequence alignment with high accuracy and high throughput

21 June 2018

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Diversity in the Oryza genus

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2041954

Long terminal repeat retrotransposons of Oryza sativa

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2041954

Genome size reduction through illegitimate recombination counteracts genome expansion in Arabidopsis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2041954

A Draft Sequence of the Rice Genome (Oryza sativa L. ssp. japonica)

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2041954

A Draft Sequence of the Rice Genome (Oryza sativa L. ssp. indica)

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2041954

Rolling-circle transposons in eukaryotes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2041954

Rice transposable elements: a survey of 73,000 sequence-tagged-connectors

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2041954

Are obese plant genomes on a diet?

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2041954

Phylogeny of rice genomes with emphasis on origins of allotetraploid species

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2041954

LINEs, SINEs and repetitive DNA: non-LTR retrotransposons in plant genomes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2041954

Rice as a model for cereal genomics

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2041954

Base-calling of automated sequencer traces using phred. I. Accuracy assessment

21 June 2018

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Origin, dispersal, cultivation and variation of rice

21 June 2018

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Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

21 June 2018

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Nested retrotransposons in the intergenic regions of the maize genome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2041954

Multiple non-LTR retrotransposons in the genome of Arabidopsis thaliana

21 June 2018

1 reference

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Retroelements, reverse transcriptase and evolution

21 June 2018

1 reference

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Origin and evolution of retroelements based upon their reverse transcriptase sequences

21 June 2018

1 reference

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Retrotransposon populations of Vicia species with varying genome size

21 June 2018

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The rice genome. Opening the door to comparative plant biology.

31 October 2018

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DNA sequence quality trimming and vector removal.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2041954

Phylogeny and transpositional activity of Ty1-copia group retrotransposons in cereal genomes.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2041954

Presence of wheat retrotransposons in Gramineae species and the origin of wheat retrotransposon families.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2041954

An abundant LINE-like element amplified in the genome of Lilium speciosum.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2041954

Formation of Solo-LTRs Through Unequal Homologous Recombination Counterbalances Amplifications of LTR Retrotransposons in Rice Oryza sativa L

31 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17727727

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Retrotransposon BARE-1 and Its Role in Genome Evolution in the Genus Hordeum

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17727727

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Molecular phylogeny of Oryzeae (Poaceae) based on DNA sequences from chloroplast, mitochondrial, and nuclear genomes

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17727727

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2148-7-152

1 reference

Dimensions Publication ID

25 July 2017

1 reference

https://scigraph.springernature.com/pub.10.1186/1471-2148-7-152

9 September 2019

1 reference

25 July 2017

1 reference