Deep analysis of cellular transcriptomes - LongSAGE versus classic MPSS (Q33300155)

25 July 2017

Deep analysis of cellular transcriptomes - LongSAGE versus classic MPSS (English)

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25 July 2017

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Vattipally B Sreenu

2

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Sarah Rowland-Jones

6

object named as

Sarah L Rowland-Jones

1 reference

25 July 2017

Lawrence Hene

1

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25 July 2017

Mai T Vuong

3

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25 July 2017

S Hussain I Abidi

4

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25 July 2017

Julian K Sutton

5

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25 July 2017

Simon J Davis

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25 July 2017

Edward J Evans

8

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25 July 2017

language of work or name

English

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publication date

24 September 2007

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25 July 2017

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25 July 2017

8

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25 July 2017

333

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https://scigraph.springernature.com/pub.10.1186/1471-2164-8-333

25 July 2017

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21 June 2018

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Analysis of tag-position bias in MPSS technology

21 June 2018

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21 June 2018

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Stage-dependent gene expression profiles during natural killer cell development

21 June 2018

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Toward the 1,000 dollars human genome.

21 June 2018

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Tag-based approaches for transcriptome research and genome annotation

21 June 2018

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Detecting novel low-abundant transcripts in Drosophila

21 June 2018

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Analysis of host response to bacterial infection using error model based gene expression microarray experiments.

21 June 2018

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Transcriptional maps of 10 human chromosomes at 5-nucleotide resolution

21 June 2018

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Reproducibility, bioinformatic analysis and power of the SAGE method to evaluate changes in transcriptome

21 June 2018

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Evaluation of window cohabitation of DNA sequencing errors and lowest PHRED quality values.

21 June 2018

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Statistical analysis of MPSS measurements: application to the study of LPS-activated macrophage gene expression

21 June 2018

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Applications of DNA tiling arrays for whole-genome analysis

21 June 2018

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The impact of SNPs on the interpretation of SAGE and MPSS experimental data

21 June 2018

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Global identification of human transcribed sequences with genome tiling arrays

21 June 2018

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Finishing the euchromatic sequence of the human genome

21 June 2018

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A comprehensive transcript index of the human genome generated using microarrays and computational approaches

21 June 2018

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The use of MPSS for whole-genome transcriptional analysis in Arabidopsis

21 June 2018

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Massively parallel signature sequencing (MPSS) as a tool for in-depth quantitative gene expression profiling in all organisms

21 June 2018

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Analysis of the transcriptional complexity of Arabidopsis thaliana by massively parallel signature sequencing

21 June 2018

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Has the yo-yo stopped? An assessment of human protein-coding gene number

21 June 2018

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The Ensembl automatic gene annotation system

21 June 2018

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21 June 2018

An overview of Ensembl

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The T cell surface--how well do we know it?

21 June 2018

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Transcript identification by analysis of short sequence tags--influence of tag length, restriction site and transcript database

21 June 2018

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MicroSAGE is highly representative and reproducible but reveals major differences in gene expression among samples obtained from similar tissues

21 June 2018

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Gene expression profile in human leukocytes

21 June 2018

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21 June 2018

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Assessment of the relationship between signal intensities and transcript concentration for Affymetrix GeneChip arrays

21 June 2018

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The Ensembl genome database project

21 June 2018

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Detecting the impact of sequencing errors on SAGE data.

21 June 2018

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Biological insights into TCRgammadelta+ and TCRalphabeta+ intraepithelial lymphocytes provided by serial analysis of gene expression (SAGE).

21 June 2018

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Signatures of the immune response

21 June 2018

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Open systems: panoramic views of gene expression

21 June 2018

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The human transcriptome map: clustering of highly expressed genes in chromosomal domains

21 June 2018

1 reference

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RefSeq and LocusLink: NCBI gene-centered resources

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2104538

Gene expression analysis by massively parallel signature sequencing (MPSS) on microbead arrays

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2104538

Comprehensive transcript analysis in small quantities of mRNA by SAGE-lite

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2104538

Base-calling of automated sequencer traces using phred. I. Accuracy assessment

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2104538

Transcription of individual genes in eukaryotic cells occurs randomly and infrequently

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2104538

Serial analysis of gene expression

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2104538

Rapid production of full-length cDNAs from rare transcripts: amplification using a single gene-specific oligonucleotide primer

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2104538

The expression of three abundance classes of messenger RNA in mouse tissues

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2104538

Complexity and characterization of polyadenylated RNA in the mouse brain

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2104538

A rapid method for computationally inferring transcriptome coverage and microarray sensitivity.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2104538

A human immunodeficiency virus 1 (HIV-1) clade A vaccine in clinical trials: stimulation of HIV-specific T-cell responses by DNA and recombinant modified vaccinia virus Ankara (MVA) vaccines in humans

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2104538

Analysis of human transcriptomes.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2104538

31 October 2018

Identifiers

DOI

10.1186/1471-2164-8-333

1 reference

Dimensions Publication ID

25 July 2017

1 reference

https://scigraph.springernature.com/pub.10.1186/1471-2164-8-333

9 September 2019

1 reference

25 July 2017

1 reference