Broad genomic and transcriptional analysis reveals a highly derived genome in dinoflagellate mitochondria (Q33300478)

25 July 2017

title

Broad genomic and transcriptional analysis reveals a highly derived genome in dinoflagellate mitochondria (English)

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25 July 2017

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5

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25 July 2017

6

Ross F Waller

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25 July 2017

4

Michael W Gray

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25 July 2017

author name string

Christopher J Jackson

series ordinal

1

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25 July 2017

John E Norman

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2

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25 July 2017

Murray N Schnare

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3

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25 July 2017

publication date

27 September 2007

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25 July 2017

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25 July 2017

volume

5

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25 July 2017

page(s)

41

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The highly reduced and fragmented mitochondrial genome of the early-branching dinoflagellate Oxyrrhis marina shares characteristics with both apicomplexan and dinoflagellate mitochondrial genomes

25 July 2017

cites work

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21 June 2018

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Plant mitochondrial genes can be expressed from mRNAs lacking stop codons.

21 June 2018

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A tertiary plastid uses genes from two endosymbionts

21 June 2018

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21 June 2018

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Unique mitochondrial genome structure in diplonemids, the sister group of kinetoplastids

21 June 2018

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Mitochondrial genetic codes evolve to match amino acid requirements of proteins

21 June 2018

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21 June 2018

Mitochondria of protists

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Loss of the mRNA-like region in mitochondrial tmRNAs of jakobids

21 June 2018

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Mitochondrial genomes: anything goes

21 June 2018

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Functional polypeptides can be synthesized from human mitochondrial transcripts lacking termination codons

21 June 2018

1 reference

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Unique mitochondrial genome architecture in unicellular relatives of animals

21 June 2018

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Characterization of fragmented mitochondrial ribosomal RNAs of the colorless green alga Polytomella parva

21 June 2018

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Polyadenylated transcripts containing random gene fragments are expressed in dinoflagellate mitochondria

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2151934

Widespread and extensive editing of mitochondrial mRNAS in dinoflagellates

21 June 2018

1 reference

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Mitochondrial genome of the colorless green alga Polytomella parva: two linear DNA molecules with homologous inverted repeat Termini

21 June 2018

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The comparative RNA web (CRW) site: an online database of comparative sequence and structure information for ribosomal, intron, and other RNAs

21 June 2018

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Detection and quantification of Pfiesteria piscicida by using the mitochondrial cytochrome b gene

21 June 2018

1 reference

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A complex organization of the gene encoding cytochrome oxidase subunit 1 in the mitochondrial genome of the dinoflagellate, Crypthecodinium cohnii: homologous recombination generates two different cox1 open reading frames

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2151934

DNA sequence analysis of the complete mitochondrial genome of the green alga Scenedesmus obliquus: evidence for UAG being a leucine and UCA being a non-sense codon

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2151934

The complete mitochondrial DNA sequence of Scenedesmus obliquus reflects an intermediate stage in the evolution of the green algal mitochondrial genome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2151934

Expression of mitochondrial protein-coding genes in Tetrahymena pyriformis

21 June 2018

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Complete sequence of the mitochondrial genome of Tetrahymena pyriformis and comparison with Paramecium aurelia mitochondrial DNA.

21 June 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2151934

The complete mitochondrial DNA sequences of Nephroselmis olivacea and Pedinomonas minor. Two radically different evolutionary patterns within green algae

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2151934

The fragmented mitochondrial ribosomal RNAs of Plasmodium falciparum have short A tails

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2151934

21 June 2018

Mitochondrial evolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2151934

A bacterial RNA that functions as both a tRNA and an mRNA.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2151934

Genome structure and gene content in protist mitochondrial DNAs

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2151934

Evolutionary relationships among the eukaryotic crown taxa taking into account site-to-site rate variation in 18S rRNA.

21 June 2018

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The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools

21 June 2018

1 reference

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The cytochrome oxidase subunit 1 gene (cox1) from the dinoflagellate, Crypthecodinium cohnii

21 June 2018

1 reference

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Identification of additional rRNA fragments encoded by the Plasmodium falciparum 6 kb element

21 June 2018

1 reference

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The Plasmodium falciparum 6 kb element is polycistronically transcribed

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2151934

Method for determining RNA 3' ends and application to human telomerase RNA

21 June 2018

1 reference

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Role of a peptide tagging system in degradation of proteins synthesized from damaged messenger RNA

21 June 2018

1 reference

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The structure and replication of kinetoplast DNA

21 June 2018

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Trans-splicing of pre-mRNA in plants, animals, and protists

21 June 2018

1 reference

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The extrachromosomal DNAs of apicomplexan parasites

21 June 2018

1 reference

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3'-end labeling of RNA with recombinant yeast poly(A) polymerase.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2151934

RNA editing in trypanosomes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2151934

Sequence and organization of the human mitochondrial genome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2151934

Studies on transformation of Escherichia coli with plasmids

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2151934

Rearranged coding segments, separated by a transfer RNA gene, specify the two parts of a discontinuous large subunit ribosomal RNA in Tetrahymena pyriformis mitochondria.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2151934

A discontinuous small subunit ribosomal RNA in Tetrahymena pyriformis mitochondria.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2151934

The wheat mitochondrial gene for subunit I of the NADH dehydrogenase complex: a trans-splicing model for this gene-in-pieces

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2151934

The 6-kb element of Plasmodium falciparum encodes mitochondrial cytochrome genes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2151934

Fragmentation of mitochondrial large subunit rRNA in the dinoflagellate Alexandrium catenella and the evolution of rRNA structure in alveolate mitochondria.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2151934

Alveolate and chlorophycean mitochondrial cox2 genes split twice independently

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2151934

Mitochondrial cytochrome b mRNA editing in dinoflagellates: possible ecological and evolutionary associations?

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2151934

Complex protein targeting to dinoflagellate plastids

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2151934

Migration of the plastid genome to the nucleus in a peridinin dinoflagellate.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2151934

Re-examining alveolate evolution using multiple protein molecular phylogenies

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2151934

Hyaloraphidium curvatum: a linear mitochondrial genome, tRNA editing, and an evolutionary link to lower fungi

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2151934

Transcriptional mapping and RNA processing of the Plasmodium falciparum mitochondrial mRNAs

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2151934

Single gene circles in dinoflagellate chloroplast genomes

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2151934

An ancestral mitochondrial DNA resembling a eubacterial genome in miniature

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2151934

Comparative structure and genomic organization of the discontinuous mitochondrial ribosomal RNA genes of Chlamydomonas eugametos and Chlamydomonas reinhardtii

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2151934

A lock-docking oligo(dT) primer for 5' and 3' RACE PCR

31 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17897476

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Scrambled ribosomal RNA gene pieces in Chlamydomonas reinhardtii mitochondrial DNA

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17897476

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1741-7007-5-41

1 reference

Dimensions Publication ID

25 July 2017

0 references

1 reference

25 July 2017

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