Bacterial community composition in Central European running waters examined by temperature gradient gel electrophoresis and sequence analysis of 16S rRNA genes (Q33306312)

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English	Bacterial community composition in Central European running waters examined by temperature gradient gel electrophoresis and sequence analysis of 16S rRNA genes	scientific article

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scholarly article

1 reference

Europe PubMed Central

25 July 2017

Bacterial community composition in Central European running waters examined by temperature gradient gel electrophoresis and sequence analysis of 16S rRNA genes (English)

1 reference

Europe PubMed Central

25 July 2017

author name string

Sara Beier

1

1 reference

Europe PubMed Central

25 July 2017

Karl-Paul Witzel

2

1 reference

Europe PubMed Central

25 July 2017

Jürgen Marxsen

3

1 reference

Europe PubMed Central

25 July 2017

language of work or name

0 references

publication date

16 November 2007

1 reference

Europe PubMed Central

25 July 2017

Applied and Environmental Microbiology

1 reference

Europe PubMed Central

25 July 2017

74

1 reference

Europe PubMed Central

25 July 2017

1

1 reference

Europe PubMed Central

25 July 2017

188-199

1 reference

Europe PubMed Central

25 July 2017

Information spiraling: Movement of bacteria and their genes in streams

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Bacterial activity and community composition in stream water and biofilm from an urban river determined by fluorescent in situ hybridization and DGGE analysis.

1 reference

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Molecular characterization of bacterial diversity in Lodgepole pine (Pinus contorta) rhizosphere soils from British Columbia forest soils differing in disturbance and geographic source

1 reference

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21 June 2018

Microbial biogeography: putting microorganisms on the map

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21 June 2018

Recurring seasonal dynamics of microbial communities in stream habitats

1 reference

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21 June 2018

Distribution of typical freshwater bacterial groups is associated with pH, temperature, and lake water retention time

1 reference

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Bacterial communities associated with benthic organic matter in headwater stream microhabitats

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21 June 2018

Complexity of bacterial communities in a river-floodplain system (Danube, Austria)

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21 June 2018

Bellerophon: a program to detect chimeric sequences in multiple sequence alignments

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21 June 2018

ARB: a software environment for sequence data

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21 June 2018

Actinobacterial 16S rRNA genes from freshwater habitats cluster in four distinct lineages

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21 June 2018

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21 June 2018

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2223207

21 June 2018

Succession of bacterial community structure along the Changjiang River determined by denaturing gradient gel electrophoresis and clone library analysis

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21 June 2018

Phylogenetic and functional heterogeneity of sediment biofilms along environmental gradients in a glacial stream

1 reference

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21 June 2018

Phylogenetic comparisons of a coastal bacterioplankton community with its counterparts in open ocean and freshwater systems

1 reference

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21 June 2018

Comparative 16S rRNA analysis of lake bacterioplankton reveals globally distributed phylogenetic clusters including an abundant group of actinobacteria

1 reference

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21 June 2018

Characterization of the microbial community of lotic organic aggregates ('river snow') in the Elbe River of Germany by cultivation and molecular methods.

1 reference

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Biofilm community structure in polluted rivers: abundance of dominant phylogenetic groups over a complete annual cycle

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2223207

21 June 2018

Phylogenetic analysis of particle-attached and free-living bacterial communities in the Columbia river, its estuary, and the adjacent coastal ocean.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2223207

21 June 2018

Frequency of formation of chimeric molecules as a consequence of PCR coamplification of 16S rRNA genes from mixed bacterial genomes.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2223207

21 June 2018

Isolation of new bacterial species from drinking water biofilms and proof of their in situ dominance with highly specific 16S rRNA probes

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2223207

21 June 2018

Seasonal distributions of dominant 16S rRNA-defined populations in a hot spring microbial mat examined by denaturing gradient gel electrophoresis

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2223207

21 June 2018

Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2223207

21 June 2018

Intraspecific variation in small-subunit rRNA sequences in GenBank: why single sequences may not adequately represent prokaryotic taxa

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Quantitative cell lysis of indigenous microorganisms and rapid extraction of microbial DNA from sediment

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21 June 2018

Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2223207

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Effect of genome size and rrn gene copy number on PCR amplification of 16S rRNA genes from a mixture of bacterial species

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Temperature-gradient gel electrophoresis. Thermodynamic analysis of nucleic acids and proteins in purified form and in cellular extracts

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Nutrients and other abiotic factors affecting bacterial communities in an Ohio River (USA).

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31 October 2018

Abundance of three bacterial populations in selected streams

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Application of denaturing gradient gel electrophoresis (DGGE) and temperature gradient gel electrophoresis (TGGE) in microbial ecology.

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Structure and seasonal dynamics of hyporheic zone microbial communities in free-stone rivers of the western United States

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based on heuristic

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The microbial loop in flowing waters

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12 December 2020

based on heuristic

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Rapid silver staining and recovery of PCR products separated on polyacrylamide gels

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https://pubmed.ncbi.nlm.nih.gov/18024682

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1128/AEM.00327-07

1 reference

Europe PubMed Central

25 July 2017

1 reference

Europe PubMed Central

25 July 2017

1 reference

Europe PubMed Central

25 July 2017

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