Predicting peptides binding to MHC class II molecules using multi-objective evolutionary algorithms (Q33306761)

25 July 2017

Predicting peptides binding to MHC class II molecules using multi-objective evolutionary algorithms (English)

1 reference

25 July 2017

0 references

4

Vladimir Brusic

1 reference

25 July 2017

Menaka Rajapakse

1

1 reference

PubMed ID

18031584

25 July 2017

Bertil Schmidt

series ordinal

2

1 reference

PubMed ID

18031584

25 July 2017

Lin Feng

series ordinal

3

1 reference

25 July 2017

22 November 2007

1 reference

25 July 2017

1 reference

25 July 2017

8

1 reference

25 July 2017

459

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Creative Commons Attribution 2.0 Generic

25 July 2017

start time

22 November 2007

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

1 reference

April 2022 Public Data File from Crossref

exact match

https://scigraph.springernature.com/pub.10.1186/1471-2105-8-459

0 references

cites work

Prediction of MHC class II binding affinity using SMM-align, a novel stabilization matrix alignment method

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Predicting Class II MHC-Peptide binding: a kernel based approach using similarity scores

21 June 2018

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SVRMHC prediction server for MHC-binding peptides

21 June 2018

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Prediction of MHC class II binding peptides based on an iterative learning model

21 June 2018

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GANN: genetic algorithm neural networks for the detection of conserved combinations of features in DNA

21 June 2018

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Discovery of sequence motifs related to coexpression of genes using evolutionary computation

21 June 2018

1 reference

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MHCBN: a comprehensive database of MHC binding and non-binding peptides

21 June 2018

1 reference

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Prediction of MHC class I binding peptides, using SVMHC

21 June 2018

1 reference

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Naturally processed HLA class II peptides reveal highly conserved immunogenic flanking region sequence preferences that reflect antigen processing rather than peptide-MHC interactions.

21 June 2018

1 reference

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Structure-based prediction of binding peptides to MHC class I molecules: application to a broad range of MHC alleles

21 June 2018

1 reference

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The I-Ag7 MHC class II molecule linked to murine diabetes is a promiscuous peptide binder

21 June 2018

1 reference

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Structural basis of peptide binding and presentation by the type I diabetes-associated MHC class II molecule of NOD mice

21 June 2018

1 reference

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Approximating the nondominated front using the Pareto Archived Evolution Strategy

21 June 2018

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A structural framework for deciphering the link between I-Ag7 and autoimmune diabetes

21 June 2018

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SYFPEITHI: database for MHC ligands and peptide motifs

21 June 2018

1 reference

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The lack of consensus for I-A(g7)-peptide binding motifs: is there a requirement for anchor amino acid side chains?

21 June 2018

1 reference

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Class II MHC quantitative binding motifs derived from a large molecular database with a versatile iterative stepwise discriminant analysis meta-algorithm

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2212666

Several common HLA-DR types share largely overlapping peptide binding repertoires

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2212666

MHCPEP, a database of MHC-binding peptides: update 1997.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2212666

A peptide-binding motif for I-A(g7), the class II major histocompatibility complex (MHC) molecule of NOD and Biozzi AB/H mice

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2212666

Gibbs motif sampling: detection of bacterial outer membrane protein repeats

21 June 2018

1 reference

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Detecting subtle sequence signals: a Gibbs sampling strategy for multiple alignment

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2212666

Prominent role of secondary anchor residues in peptide binding to HLA-A2.1 molecules

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2212666

Importance of peptide amino and carboxyl termini to the stability of MHC class I molecules

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2212666

Antigenic peptide binding by class I and class II histocompatibility proteins

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2212666

Precise prediction of major histocompatibility complex class II-peptide interaction based on peptide side chain scanning

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2212666

MHC ligands and peptide motifs: first listing

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2212666

Fitting a mixture model by expectation maximization to discover motifs in biopolymers

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2212666

Measuring the accuracy of diagnostic systems

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2212666

Sequence logos: a new way to display consensus sequences

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2212666

Allele-specific motifs revealed by sequencing of self-peptides eluted from MHC molecules

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2212666

Peptide length-based prediction of peptide-MHC class II binding.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2212666

Prediction of peptide binding to major histocompatibility complex class II molecules through use of boosted fuzzy classifier with SWEEP operator method.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2212666

Hidden Markov model-based prediction of antigenic peptides that interact with MHC class II molecules.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2212666

Prediction of MHC class II binders using the ant colony search strategy.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2212666

Predictive Bayesian neural network models of MHC class II peptide binding.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2212666

Automated generation and evaluation of specific MHC binding predictive tools: ARB matrix applications.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2212666

Enhancement to the RANKPEP resource for the prediction of peptide binding to MHC molecules using profiles.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2212666

Improved prediction of MHC class I and class II epitopes using a novel Gibbs sampling approach.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2212666

SVM based method for predicting HLA-DRB1*0401 binding peptides in an antigen sequence.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2212666

Towards the in silico identification of class II restricted T-cell epitopes: a partial least squares iterative self-consistent algorithm for affinity prediction.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2212666

Application of support vector machines for T-cell epitopes prediction

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2212666

Prediction of MHC class I binding peptides using profile motifs.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2212666

A Gibbs sampling method to detect overrepresented motifs in the upstream regions of coexpressed genes.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2212666

In APCs, the autologous peptides selected by the diabetogenic I-Ag7 molecule are unique and determined by the amino acid changes in the P9 pocket

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2212666

Predicting class II MHC/peptide multi-level binding with an iterative stepwise discriminant analysis meta-algorithm

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2212666

The motif for peptide binding to the insulin-dependent diabetes mellitus-associated class II MHC molecule I-Ag7 validated by phage display library

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2212666

Predicting peptides that bind to MHC molecules using supervised learning of hidden Markov models.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2212666

Application of genetic search in derivation of matrix models of peptide binding to MHC molecules.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2212666

Two complementary methods for predicting peptides binding major histocompatibility complex molecules.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2212666

Using a neural network to identify potential HLA-DR1 binding sites within proteins.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2212666

Prediction of binding to MHC class I molecules.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2212666

Generation of tissue-specific and promiscuous HLA ligand databases using DNA microarrays and virtual HLA class II matrices

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2212666

Molecular characterization of the diabetes-associated mouse MHC class II protein, I-Ag7

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2212666

The class II MHC I-Ag7 molecules from non-obese diabetic mice are poor peptide binders

31 October 2018

1 reference

12 December 2020

Binding of conserved islet peptides by human and murine MHC class II molecules associated with susceptibility to type I diabetes

1 reference

12 December 2020

Encephalitogenic epitopes of myelin basic protein, proteolipid protein, myelin oligodendrocyte glycoprotein for experimental allergic encephalomyelitis induction in Biozzi ABH (H-2Ag7) mice share an amino acid motif

1 reference

12 December 2020

HLA-DR binding analysis of peptides from islet antigens in IDDM

1 reference

12 December 2020

Self peptides isolated from MHC glycoproteins of non-obese diabetic mice

1 reference

12 December 2020

Identifiers

DOI

10.1186/1471-2105-8-459

1 reference

journals/bmcbi/RajapakseSFB07

25 July 2017

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

25 July 2017

1 reference

PubMed ID

18031584