LeARN: a platform for detecting, clustering and annotating non-coding RNAs (Q33314655)

25 July 2017

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title

LeARN: a platform for detecting, clustering and annotating non-coding RNAs (English)

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25 July 2017

4

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25 July 2017

1

Céline Noirot

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25 July 2017

Christine Gaspin

2

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PubMed ID

18194551

25 July 2017

Thomas Schiex

series ordinal

3

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25 July 2017

14 January 2008

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25 July 2017

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25 July 2017

9

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25 July 2017

21

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https://scigraph.springernature.com/pub.10.1186/1471-2105-9-21

25 July 2017

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cites work

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4SALE--a tool for synchronous RNA sequence and secondary structure alignment and editing

14 July 2018

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AGMIAL: implementing an annotation strategy for prokaryote genomes as a distributed system

14 July 2018

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Experimental approaches to identify non-coding RNAs

14 July 2018

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A computational screen for mammalian pseudouridylation guide H/ACA RNAs

14 July 2018

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The widespread impact of mammalian MicroRNAs on mRNA repression and evolution

14 July 2018

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Sequence to Structure (S2S): display, manipulate and interconnect RNA data from sequence to structure

14 July 2018

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Fast and reliable prediction of noncoding RNAs

14 July 2018

1 reference

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14 July 2018

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Rfam: annotating non-coding RNAs in complete genomes

14 July 2018

1 reference

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NONCODE: an integrated knowledge database of non-coding RNAs

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2241582

MSARI: multiple sequence alignments for statistical detection of RNA secondary structure

14 July 2018

1 reference

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Detection of 91 potential conserved plant microRNAs in Arabidopsis thaliana and Oryza sativa identifies important target genes

14 July 2018

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14 July 2018

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Multiple sequence alignment with the Clustal series of programs

14 July 2018

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Vienna RNA secondary structure server

14 July 2018

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Mfold web server for nucleic acid folding and hybridization prediction

14 July 2018

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14 July 2018

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The microRNAs of Caenorhabditis elegans

14 July 2018

1 reference

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Binding of L7Ae protein to the K-turn of archaeal snoRNAs: a shared RNA binding motif for C/D and H/ACA box snoRNAs in Archaea

14 July 2018

1 reference

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Breakthrough of the year. Small RNAs make big splash

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2241582

A memory-efficient dynamic programming algorithm for optimal alignment of a sequence to an RNA secondary structure

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2241582

RNAML: a standard syntax for exchanging RNA information.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2241582

Noncoding RNA genes identified in AT-rich hyperthermophiles

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2241582

Noncoding RNA gene detection using comparative sequence analysis

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2241582

Direct RNA motif definition and identification from multiple sequence alignments using secondary structure profiles

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2241582

An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2241582

ESSA: an integrated and interactive computer tool for analysing RNA secondary structure

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2241582

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2241582

tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2241582

The MtMMPL1 early nodulin is a novel member of the matrix metalloendoproteinase family with a role in Medicago truncatula infection by Sinorhizobium meliloti.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2241582

Searching RNA motifs and their intermolecular contacts with constraint networks.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2241582

ddbRNA: detection of conserved secondary structures in multiple alignments.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2241582

Modeling the three-dimensional structure of RNA using discrete nucleotide conformational sets.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2241582

31 October 2018

Identifiers

DOI

10.1186/1471-2105-9-21

1 reference

journals/bmcbi/NoirotGSG08

25 July 2017

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

25 July 2017

1 reference

PubMed ID

18194551