E-CAI: a novel server to estimate an expected value of Codon Adaptation Index (eCAI). (Q33317075)

25 July 2017

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title

E-CAI: a novel server to estimate an expected value of Codon Adaptation Index (eCAI). (English)

1 reference

25 July 2017

author

Santiago Garcia-Vallvé

object named as

Santiago Garcia-Vallvé

series ordinal

3

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author name string

Pere Puigbò

series ordinal

1

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25 July 2017

Ignacio G Bravo

series ordinal

2

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25 July 2017

publication date

29 January 2008

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25 July 2017

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25 July 2017

volume

9

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25 July 2017

page(s)

65

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An improved implementation of codon adaptation index

25 July 2017

cites work

1 reference

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21 June 2018

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An environmental signature for 323 microbial genomes based on codon adaptation indices

21 June 2018

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Use of a multi-way method to analyze the amino acid composition of a conserved group of orthologous proteins in prokaryotes

21 June 2018

1 reference

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The action of selection on codon bias in the human genome is related to frequency, complexity, and chronology of amino acids

21 June 2018

1 reference

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21 June 2018

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Comparison of codon usage measures and their applicability in prediction of microbial gene expressivity

21 June 2018

1 reference

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Correlation of codon bias measures with mRNA levels: analysis of transcriptome data from Escherichia coli

21 June 2018

1 reference

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Shaping the mitochondrial proteome

21 June 2018

1 reference

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Mitochondrial genomes: anything goes

21 June 2018

1 reference

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Evolution of mitochondrial gene content: gene loss and transfer to the nucleus

21 June 2018

1 reference

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21 June 2018

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The origin and early evolution of mitochondria

21 June 2018

1 reference

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Initial sequencing and analysis of the human genome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2246156

Codon usage tabulated from international DNA sequence databases: status for the year 2000

21 June 2018

1 reference

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21 June 2018

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Molecular archaeology of the Escherichia coli genome

21 June 2018

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21 June 2018

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The codon Adaptation Index--a measure of directional synonymous codon usage bias, and its potential applications

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2246156

Predicting gene expression level from codon usage bias.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2246156

Predicted highly expressed genes in Nocardia farcinica and the implication for its primary metabolism and nocardial virulence

31 October 2018

1 reference

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A single determinant dominates the rate of yeast protein evolution

31 October 2018

1 reference

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Predicted highly expressed genes in the genomes of Streptomyces coelicolor and Streptomyces avermitilis and the implications for their metabolism

31 October 2018

1 reference

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Codon bias as a factor in regulating expression via translation rate in the human genome.

31 October 2018

1 reference

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Codon adaptation index as a measure of dominating codon bias.

31 October 2018

1 reference

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Synonymous codon usage in Pseudomonas aeruginosa PA01.

31 October 2018

1 reference

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Selection on the codon bias of chloroplast and cyanelle genes in different plant and algal lineages.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2246156

GenRGenS: software for generating random genomic sequences and structures

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2246156

Horizontal gene transfer in glycosyl hydrolases inferred from codon usage in Escherichia coli and Bacillus subtilis

31 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18230160

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

The causes of protein evolutionary rate variation

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18230160

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2105-9-65

1 reference

journals/bmcbi/PuigboBG08

25 July 2017

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

25 July 2017

1 reference