Inferring evolution of fish proteins: the globin case study (Q33317677)

25 July 2017

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title

Inferring evolution of fish proteins: the globin case study (English)

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25 July 2017

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3

Guillaume Lecointre

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25 July 2017

Agnes Dettaï

1

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25 July 2017

Guido di Prisco

series ordinal

2

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25 July 2017

Elio Parisi

series ordinal

4

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25 July 2017

Cinzia Verde

series ordinal

5

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25 July 2017

language of work or name

English

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publication date

1 January 2008

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25 July 2017

published in

Methods in Enzymology

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25 July 2017

volume

436

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25 July 2017

page(s)

539-570

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ProtTest: selection of best-fit models of protein evolution

25 July 2017

cites work

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2808%2936030-3

7 January 2021

Antarctic fish hemoglobins: evidence for adaptive evolution at subzero temperature.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2808%2936030-3

7 January 2021

Evolution of oxygen secretion in fishes and the emergence of a complex physiological system

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2808%2936030-3

7 January 2021

Knowledge-based prediction of protein structures and the design of novel molecules

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2808%2936030-3

7 January 2021

Use of o-phthalaldehyde to reduce background during automated Edman degradation

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2808%2936030-3

7 January 2021

Branch Support and Tree Stability

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2808%2936030-3

7 January 2021

Root effect hemoglobins.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2808%2936030-3

7 January 2021

Bias in phylogenetic reconstruction of vertebrate rhodopsin sequences.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2808%2936030-3

7 January 2021

Applications of ancestral protein reconstruction in understanding protein function: GFP-like proteins

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2808%2936030-3

7 January 2021

Single-Step Method of RNA Isolation by Acid Guanidinium Thiocyanate–Phenol–Chloroform Extraction

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2808%2936030-3

7 January 2021

The relation between the divergence of sequence and structure in proteins

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2808%2936030-3

7 January 2021

Analytical methods for detecting paralogy in molecular datasets

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2808%2936030-3

7 January 2021

Animal phylogenomics: multiple interspecific genome comparisons

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2808%2936030-3

7 January 2021

In search of notothenioid (Teleostei) relatives

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2808%2936030-3

7 January 2021

Karyotypic analysis and evidence of tetraploidy in the North American paddlefish, Polyodon spathula

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2808%2936030-3

7 January 2021

Biogeography and adaptation of Notothenioid fish: hemoglobin function and globin-gene evolution.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2808%2936030-3

7 January 2021

New programs for protein tertiary structure prediction

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2808%2936030-3

7 January 2021

Basal teleosts and the question of elopomorph monophyly. Morphological and molecular approaches

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2808%2936030-3

7 January 2021

Distinguishing Homologous from Analogous Proteins

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2808%2936030-3

7 January 2021

Neighbor-joining revealed.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2808%2936030-3

7 January 2021

Predicting functional divergence in protein evolution by site-specific rate shifts

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2808%2936030-3

7 January 2021

Is it better to add taxa or characters to a difficult phylogenetic problem?

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2808%2936030-3

7 January 2021

Statistical methods for testing functional divergence after gene duplication

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2808%2936030-3

7 January 2021

Maximum-likelihood approach for gene family evolution under functional divergence.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2808%2936030-3

7 January 2021

Functional divergence in protein (family) sequence evolution

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2808%2936030-3

7 January 2021

A simple statistical method for estimating type-II (cluster-specific) functional divergence of protein sequences.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2808%2936030-3

7 January 2021

DIVERGE: phylogeny-based analysis for functional-structural divergence of a protein family.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2808%2936030-3

7 January 2021

A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2808%2936030-3

7 January 2021

Evolution and origin of vomeronasal-type odorant receptor gene repertoire in fishes

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2808%2936030-3

7 January 2021

TimeTree: a public knowledge-base of divergence times among organisms

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2808%2936030-3

7 January 2021

CLUSTAL: a package for performing multiple sequence alignment on a microcomputer

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2808%2936030-3

7 January 2021

Molecular Versus Morphological Approaches to Systematics

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2808%2936030-3

7 January 2021

Is sparse taxon sampling a problem for phylogenetic inference?

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2808%2936030-3

7 January 2021

Errors in protein structures

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2808%2936030-3

7 January 2021

Gene duplication: the genomic trade in spare parts

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2808%2936030-3

7 January 2021

A new time-scale for ray-finned fish evolution

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2808%2936030-3

7 January 2021

Basal actinopterygian relationships: a mitogenomic perspective on the phylogeny of the "ancient fish".

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2808%2936030-3

7 January 2021

Basal euteleostean relationships: a mitogenomic perspective on the phylogenetic reality of the “Protacanthopterygii”

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2808%2936030-3

7 January 2021

Knowledge-Based Protein Modeling

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2808%2936030-3

7 January 2021

Basal jawed vertebrate phylogeny inferred from multiple nuclear DNA-coded genes

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2808%2936030-3

7 January 2021

A Concern for Evidence and a Phylogenetic Hypothesis of Relationships Among Epicrates (Boidae, Serpentes)

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2808%2936030-3

7 January 2021

Gene duplication, gene loss and evolution of expression domains in the vertebrate nuclear receptor NR5A (Ftz-F1) family

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2808%2936030-3

7 January 2021

15 Cleavage at aspartylprolyl bonds

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2808%2936030-3

7 January 2021

Suppression of long-branch attraction artefacts in the animal phylogeny using a site-heterogeneous model

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2808%2936030-3

7 January 2021

PROCHECK: a program to check the stereochemical quality of protein structures

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2808%2936030-3

7 January 2021

A 28S rRNA-based phylogeny of the gnathostomes: first steps in the analysis of conflict and congruence with morphologically based cladograms

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2808%2936030-3

7 January 2021

Species sampling has a major impact on phylogenetic inference

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2808%2936030-3

7 January 2021

The origin of new genes: glimpses from the young and old

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2808%2936030-3

7 January 2021

The evolutionary fate and consequences of duplicate genes

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2808%2936030-3

7 January 2021

Gene Trees in Species Trees

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2808%2936030-3

7 January 2021

Evolution of globin genes of the medaka Oryzias latipes (Euteleostei; Beloniformes; Oryziinae).

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2808%2936030-3

7 January 2021

Analytical methods for studying the evolution of paralogs using duplicate gene datasets

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2808%2936030-3

7 January 2021

High resolution crystal structure of deoxy hemoglobin from Trematomus bernacchii at different pH values: The role of histidine residues in modulating the strength of the root effect

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2808%2936030-3

7 January 2021

Minimal structural requirements for root effect: crystal structure of the cathodic hemoglobin isolated from the antarctic fish Trematomus newnesi

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2808%2936030-3

7 January 2021

The phylogenetic position of toadfishes (order Batrachoidiformes) in the higher ray-finned fish as inferred from partitioned Bayesian analysis of 102 whole mitochondrial genome sequences

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2808%2936030-3

7 January 2021

Major patterns of higher teleostean phylogenies: a new perspective based on 100 complete mitochondrial DNA sequences.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2808%2936030-3

7 January 2021

Disaptation and recovery in the evolution of Antarctic fishes.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2808%2936030-3

7 January 2021

A genomic fossil reveals key steps in hemoglobin loss by the antarctic icefishes

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2808%2936030-3

7 January 2021

The Parsimony Ratchet, a New Method for Rapid Parsimony Analysis

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2808%2936030-3

7 January 2021

T-Coffee: A novel method for fast and accurate multiple sequence alignment

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2808%2936030-3

7 January 2021

3DCoffee: combining protein sequences and structures within multiple sequence alignments

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2808%2936030-3

7 January 2021

Model selection and model averaging in phylogenetics: advantages of akaike information criterion and bayesian approaches over likelihood ratio tests

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2808%2936030-3

7 January 2021

MODELTEST: testing the model of DNA substitution

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2808%2936030-3

7 January 2021

Splitting pairs: the diverging fates of duplicated genes

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2808%2936030-3

7 January 2021

https://api.crossref.org/works/10.1016%2FS0076-6879%2808%2936030-3

1 reference

7 January 2021

Euteleost fish genomes are characterized by expansion of gene families

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2808%2936030-3

7 January 2021

MrBayes 3: Bayesian phylogenetic inference under mixed models

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2808%2936030-3

7 January 2021

Comparative protein modelling by satisfaction of spatial restraints

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2808%2936030-3

7 January 2021

When bad things happen to good fish: the loss of hemoglobin and myoglobin expression in Antarctic icefishes

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2808%2936030-3

7 January 2021

Variable expression of myoglobin among the hemoglobinless Antarctic icefishes

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2808%2936030-3

7 January 2021

Polyphyly of the mail-cheeked fishes (Teleostei: Scorpaeniformes): evidence from mitochondrial and nuclear sequence data

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2808%2936030-3

7 January 2021

Venom evolution widespread in fishes: a phylogenetic road map for the bioprospecting of piscine venoms

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2808%2936030-3

7 January 2021

Molecular phylogeny of early vertebrates: monophyly of the agnathans as revealed by sequences of 35 genes

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2808%2936030-3

7 January 2021

The phylogenetic relationship of tetrapod, coelacanth, and lungfish revealed by the sequences of forty-four nuclear genes

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2808%2936030-3

7 January 2021

The amino acid sequence and oxygen-binding properties of the single hemoglobin of the cold-adapted Antarctic teleost Gymnodraco acuticeps

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2808%2936030-3

7 January 2021

Comparative genomics provides evidence for an ancient genome duplication event in fish

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2808%2936030-3

7 January 2021

Genome duplication, a trait shared by 22000 species of ray-finned fish

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2808%2936030-3

7 January 2021

The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2808%2936030-3

7 January 2021

Tetraploid origin of the karyotype of catostomid fishes

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2808%2936030-3

7 January 2021

Wanda: a database of duplicated fish genes

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2808%2936030-3

7 January 2021

Molecular synapomorphies resolve evolutionary relationships of extant jawed vertebrates

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2808%2936030-3

7 January 2021

The oxygen transport system in three species of the boreal fish family Gadidae. Molecular phylogeny of hemoglobin

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2808%2936030-3

7 January 2021

Structure and function of the Gondwanian hemoglobin of Pseudaphritis urvillii, a primitive notothenioid fish of temperate latitudes.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2808%2936030-3

7 January 2021

Combining data sets with different phylogenetic histories

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2808%2936030-3

7 January 2021

THE CHOROID RETE MIRABILE OF THE FISH EYE. I. OXYGEN SECRETION AND STRUCTURE: COMPARISON WITH THE SWIMBLADDER RETE MIRABILE

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2808%2936030-3

7 January 2021

10.1016/S0076-6879(08)36030-3

Identifiers

DOI

1 reference

25 July 2017

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