uShuffle: a useful tool for shuffling biological sequences while preserving the k-let counts (Q33327768)

17 April 2018

review article

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title

uShuffle: a useful tool for shuffling biological sequences while preserving the k-let counts (English)

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17 April 2018

Joel Gillespie

3

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author name string

Minghui Jiang

series ordinal

1

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17 April 2018

James Anderson

series ordinal

2

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17 April 2018

Martin Mayne

series ordinal

4

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17 April 2018

publication date

11 April 2008

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17 April 2018

published in

BMC Bioinformatics

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17 April 2018

volume

9

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17 April 2018

page(s)

192

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17 April 2018

Creative Commons Attribution 2.0 Generic

copyright license

start time

11 April 2008

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

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April 2022 Public Data File from Crossref

cites work

Structural RNA has lower folding energy than random RNA of the same dinucleotide frequency

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2375906

Shufflet: shuffling sequences while conserving the k-let counts.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2375906

No evidence that mRNAs have lower folding free energies than random sequences with the same dinucleotide distribution

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2375906

mRNAs have greater negative folding free energies than shuffled or codon choice randomized sequences

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2375906

Some rules in the ordering of nucleotides in the DNA.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2375906

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2375906

Statistical characterization of nucleic acid sequence functional domains

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2375906

A comparison of RNA folding measures.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2375906

Evidence that microRNA precursors, unlike other non-coding RNAs, have lower folding free energies than random sequences.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2375906

Secondary structure alone is generally not statistically significant for the detection of noncoding RNAs.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2375906

Significance of nucleotide sequence alignments: a method for random sequence permutation that preserves dinucleotide and codon usage.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2375906

A program for predicting significant RNA secondary structures.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2375906

31 October 2018

Identifiers

DOI

10.1186/1471-2105-9-192

1 reference

17 April 2018

journals/bmcbi/JiangAGM08

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

17 April 2018

PubMed publication ID

18405375

1 reference

17 April 2018