Performance and scalability of discriminative metrics for comparative gene identification in 12 Drosophila genomes (Q33329089)

25 July 2017

Performance and scalability of discriminative metrics for comparative gene identification in 12 Drosophila genomes (English)

1 reference

25 July 2017

0 references

4

Manolis Kellis

1 reference

25 July 2017

Michael F Lin

1

1 reference

PubMed ID

18421375

25 July 2017

Ameya N Deoras

series ordinal

2

1 reference

PubMed ID

18421375

25 July 2017

Matthew D Rasmussen

series ordinal

3

1 reference

25 July 2017

18 April 2008

1 reference

PLOS Computational Biology

25 July 2017

1 reference

25 July 2017

4

1 reference

25 July 2017

4

1 reference

25 July 2017

e1000067

1 reference

Creative Commons Attribution 4.0 International

25 July 2017

start time

18 April 2008

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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Peptides encoded by short ORFs control development and define a new eukaryotic gene family

21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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The abundance of short proteins in the mammalian proteome

21 June 2018

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Distinguishing protein-coding from non-coding RNAs through support vector machines

21 June 2018

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Genome annotation past, present, and future: how to define an ORF at each locus

21 June 2018

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An analysis of the feasibility of short read sequencing

21 June 2018

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Tip of another iceberg: Drosophila serpins

21 June 2018

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Nested genes in the human genome

21 June 2018

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An initial strategy for the systematic identification of functional elements in the human genome by low-redundancy comparative sequencing

21 June 2018

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A model of the statistical power of comparative genome sequence analysis

21 June 2018

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Comparative genome sequencing of Drosophila pseudoobscura: chromosomal, gene, and cis-element evolution

21 June 2018

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Analysis of small human proteins reveals the translation of upstream open reading frames of mRNAs

21 June 2018

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Aligning multiple genomic sequences with the threaded blockset aligner

21 June 2018

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21 June 2018

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Comparison of various algorithms for recognizing short coding sequences of human genes

21 June 2018

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21 June 2018

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A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood

21 June 2018

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Comparative analyses of multi-species sequences from targeted genomic regions

21 June 2018

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Computational identification of protein coding potential of conserved sequence tags through cross-species evolutionary analysis

21 June 2018

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21 June 2018

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Human–Mouse Gene Identification by Comparative Evidence Integration and Evolutionary Analysis

21 June 2018

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SLAM: cross-species gene finding and alignment with a generalized pair hidden Markov model

21 June 2018

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Assessing the impact of comparative genomic sequence data on the functional annotation of the Drosophila genome

21 June 2018

1 reference

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Annotation of the Drosophila melanogaster euchromatic genome: a systematic review

21 June 2018

1 reference

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Comparative gene prediction in human and mouse

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2291194

Associations between human disease genes and overlapping gene groups and multiple amino acid runs

21 June 2018

1 reference

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Comparative genome and proteome analysis of Anopheles gambiae and Drosophila melanogaster

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2291194

The Genome Sequence of the Malaria Mosquito Anopheles gambiae

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2291194

Computational prediction of eukaryotic protein-coding genes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2291194

The human genome browser at UCSC

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2291194

The K(A)/K(S) ratio test for assessing the protein-coding potential of genomic regions: an empirical and simulation study

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2291194

Gene expression and molecular evolution

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2291194

Integrating genomic homology into gene structure prediction.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2291194

Statistical methods for detecting molecular adaptation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2291194

Recognition of protein coding genes in the yeast genome at better than 95% accuracy based on the Z curve

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2291194

Human and mouse gene structure: comparative analysis and application to exon prediction

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2291194

Gene ontology: tool for the unification of biology

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2291194

The genome sequence of Drosophila melanogaster

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2291194

Estimating synonymous and nonsynonymous substitution rates under realistic evolutionary models

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2291194

Improved microbial gene identification with GLIMMER

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2291194

CRITICA: coding region identification tool invoking comparative analysis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2291194

The role of population size in molecular evolution

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2291194

Should we expect substitution rate to depend on population size?

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2291194

PAML: a program package for phylogenetic analysis by maximum likelihood

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2291194

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2291194

Prediction of probable genes by Fourier analysis of genomic sequences

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2291194

Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2291194

Assessment of protein coding measures

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2291194

A screen for immunity genes evolving under positive selection in Drosophila.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2291194

Using multiple alignments to improve gene prediction.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2291194

Methods in comparative genomics: genome correspondence, gene identification and regulatory motif discovery.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2291194

Comparative ab initio prediction of gene structures using pair HMMs.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2291194

Evolution of long-range fractal correlations and 1/f noise in DNA base sequences

31 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18421375

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PCBI.1000067

1 reference

25 July 2017

journals/ploscb/LinDRK08

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

25 July 2017

1 reference

PubMed ID

18421375