Evolutionary rates and patterns for human transcription factor binding sites derived from repetitive DNA (Q33335382)

25 July 2017

Evolutionary rates and patterns for human transcription factor binding sites derived from repetitive DNA (English)

1 reference

25 July 2017

Leonardo Mariño-Ramírez

object named as

Leonardo Mariño-Ramírez

2

0 references

David Landsman

object named as

David Landsman

3

0 references

author name string

Nalini Polavarapu

1

1 reference

25 July 2017

John F McDonald

4

1 reference

25 July 2017

I King Jordan

5

1 reference

25 July 2017

language of work or name

English

0 references

publication date

17 May 2008

1 reference

25 July 2017

1 reference

25 July 2017

9

1 reference

25 July 2017

226

1 reference

https://scigraph.springernature.com/pub.10.1186/1471-2164-9-226

25 July 2017

0 references

cites work

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Thousands of human mobile element fragments undergo strong purifying selection near developmental genes

21 June 2018

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Repeated recruitment of LTR retrotransposons as promoters by the anti-apoptotic locus NAIP during mammalian evolution

21 June 2018

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A family of conserved noncoding elements derived from an ancient transposable element

21 June 2018

1 reference

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Transposable element derived DNaseI-hypersensitive sites in the human genome.

21 June 2018

1 reference

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Functional noncoding sequences derived from SINEs in the mammalian genome

21 June 2018

1 reference

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A distal enhancer and an ultraconserved exon are derived from a novel retroposon

21 June 2018

1 reference

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A large family of ancient repeat elements in the human genome is under strong selection

21 June 2018

1 reference

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Transcription of two human genes from a bidirectional endogenous retrovirus promoter

21 June 2018

1 reference

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Impact of transposable elements on the evolution of mammalian gene regulation

21 June 2018

1 reference

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Transposable elements donate lineage-specific regulatory sequences to host genomes

21 June 2018

1 reference

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Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes

21 June 2018

1 reference

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The ENCODE (ENCyclopedia Of DNA Elements) Project

21 June 2018

1 reference

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Retroelements and the human genome: new perspectives on an old relation

21 June 2018

1 reference

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WebLogo: A Sequence Logo Generator

21 June 2018

1 reference

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Applied bioinformatics for the identification of regulatory elements

21 June 2018

1 reference

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Aligning multiple genomic sequences with the threaded blockset aligner

21 June 2018

1 reference

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Transposable elements in mammals promote regulatory variation and diversification of genes with specialized functions

21 June 2018

1 reference

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An endogenous retroviral long terminal repeat is the dominant promoter for human β1,3-galactosyltransferase 5 in the colon

21 June 2018

1 reference

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Of mice and men: phylogenetic footprinting aids the discovery of regulatory elements

21 June 2018

1 reference

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Analysis of primate genomic variation reveals a repeat-driven expansion of the human genome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2397414

Origin of a substantial fraction of human regulatory sequences from transposable elements

21 June 2018

1 reference

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TRANSFAC: transcriptional regulation, from patterns to profiles

21 June 2018

1 reference

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Initial sequencing and comparative analysis of the mouse genome

21 June 2018

1 reference

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The human genome browser at UCSC

21 June 2018

1 reference

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Perspective: transposable elements, parasitic DNA, and genome evolution

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2397414

Initial sequencing and analysis of the human genome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2397414

The Sequence of the Human Genome

21 June 2018

1 reference

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Target genes of beta-catenin-T cell-factor/lymphoid-enhancer-factor signaling in human colorectal carcinomas

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2397414

Mobile elements inserted in the distant past have taken on important functions

21 June 2018

1 reference

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DNA sequence insertion and evolutionary variation in gene regulation

21 June 2018

1 reference

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Selfish DNA: the ultimate parasite

21 June 2018

1 reference

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Selfish genes, the phenotype paradigm and genome evolution

21 June 2018

1 reference

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Sequence logos: a new way to display consensus sequences

21 June 2018

1 reference

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Retroviral and pseudogene insertion sites reveal the lineage of human salivary and pancreatic amylase genes from a single gene during primate evolution

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2397414

Phylogenetic footprinting reveals a nuclear protein which binds to silencer sequences in the human gamma and epsilon globin genes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2397414

Site2genome: locating short DNA sequences in whole genomes.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2397414

Conserved fragments of transposable elements in intergenic regions: evidence for widespread recruitment of MIR- and L2-derived sequences within the mouse and human genomes

31 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18485226

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Transposable elements as a significant source of transcription regulating signals

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18485226

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2164-9-226

1 reference

Dimensions Publication ID

25 July 2017

1 reference

https://scigraph.springernature.com/pub.10.1186/1471-2164-9-226

9 September 2019

1 reference

25 July 2017

1 reference