Uncovering rate variation of lateral gene transfer during bacterial genome evolution (Q33336248)

25 July 2017

Uncovering rate variation of lateral gene transfer during bacterial genome evolution. (English)

1 reference

25 July 2017

horizontal gene transfer

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1 reference

Weilong Hao

1

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author name string

G Brian Golding

series ordinal

2

1 reference

PubMed ID

18492275

25 July 2017

language of work or name

English

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publication date

20 May 2008

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25 July 2017

1 reference

25 July 2017

9

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25 July 2017

235

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https://scigraph.springernature.com/pub.10.1186/1471-2164-9-235

25 July 2017

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cites work

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Systematic overestimation of gene gain through false diagnosis of gene absence

21 June 2018

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The role of laterally transferred genes in adaptive evolution

21 June 2018

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Ancestral genome sizes specify the minimum rate of lateral gene transfer during prokaryote evolution.

21 June 2018

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H-NS mediates the silencing of laterally acquired genes in bacteria

21 June 2018

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Phylogenetic analyses of cyanobacterial genomes: quantification of horizontal gene transfer events

21 June 2018

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Selective silencing of foreign DNA with low GC content by the H-NS protein in Salmonella

21 June 2018

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The fate of laterally transferred genes: life in the fast lane to adaptation or death

21 June 2018

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Toward Automatic Reconstruction of a Highly Resolved Tree of Life

21 June 2018

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Insights on biology and evolution from microbial genome sequencing

21 June 2018

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Horizontal gene transfer, genome innovation and evolution

21 June 2018

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16S rRNA phylogeny of sponge-associated cyanobacteria

21 June 2018

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Complete genome sequence and analysis of the multiresistant nosocomial pathogen Corynebacterium jeikeium K411, a lipid-requiring bacterium of the human skin flora

21 June 2018

1 reference

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Do orthologous gene phylogenies really support tree-thinking?

21 June 2018

1 reference

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Phylogenomics and the reconstruction of the tree of life

21 June 2018

1 reference

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Multigene analyses of bilaterian animals corroborate the monophyly of Ecdysozoa, Lophotrochozoa, and Protostomia

21 June 2018

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Computing prokaryotic gene ubiquity: rescuing the core from extinction

21 June 2018

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Lack of evidence for horizontal transfer of the lac operon into Escherichia coli

21 June 2018

1 reference

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Determinants of adaptive evolution at the molecular level: the extended complexity hypothesis

21 June 2018

1 reference

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Clann: investigating phylogenetic information through supertree analyses

21 June 2018

1 reference

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MUSCLE: multiple sequence alignment with high accuracy and high throughput

21 June 2018

1 reference

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A phylogenomic study of endosymbiotic bacteria

21 June 2018

1 reference

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Genome-scale approaches to resolving incongruence in molecular phylogenies

21 June 2018

1 reference

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The source of laterally transferred genes in bacterial genomes

21 June 2018

1 reference

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Different evolutionary patterns between young duplicate genes in the human genome

21 June 2018

1 reference

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Duplication is more common among laterally transferred genes than among indigenous genes

21 June 2018

1 reference

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Phylogenetics and the cohesion of bacterial genomes

21 June 2018

1 reference

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The balance of driving forces during genome evolution in prokaryotes

21 June 2018

1 reference

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The genetic core of the universal ancestor

21 June 2018

1 reference

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Algorithms for computing parsimonious evolutionary scenarios for genome evolution, the last universal common ancestor and dominance of horizontal gene transfer in the evolution of prokaryotes

21 June 2018

1 reference

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Prokaryotic evolution in light of gene transfer

21 June 2018

1 reference

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Rapid divergence in expression between duplicate genes inferred from microarray data

21 June 2018

1 reference

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Lateral gene transfer and parallel evolution in the history of glutathione biosynthesis genes

21 June 2018

1 reference

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Taking variation of evolutionary rates between sites into account in inferring phylogenies

21 June 2018

1 reference

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MRBAYES: Bayesian inference of phylogenetic trees

21 June 2018

1 reference

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Ecological fitness, genomic islands and bacterial pathogenicity. A Darwinian view of the evolution of microbes

21 June 2018

1 reference

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Towards understanding the first genome sequence of a crenarchaeon by genome annotation using clusters of orthologous groups of proteins (COGs)

21 June 2018

1 reference

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Evolutionary dynamics of full genome content in Escherichia coli

21 June 2018

1 reference

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Horizontal gene transfer in bacterial and archaeal complete genomes

21 June 2018

1 reference

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Horizontal gene transfer among genomes: the complexity hypothesis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2426709

Genomic evidence for two functionally distinct gene classes.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2426709

A genomic perspective on protein families

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2426709

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2426709

Pathogenicity islands of virulent bacteria: structure, function and impact on microbial evolution

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2426709

Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: approximate methods

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2426709

How close is close: 16S rRNA sequence identity may not be sufficient to guarantee species identity

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2426709

High rates of lateral gene transfer are not due to false diagnosis of gene absence

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2426709

Integration of horizontally transferred genes into regulatory interaction networks takes many million years.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2426709

Can biochemical properties serve as selective pressure for gene selection during inter-species and endosymbiotic lateral gene transfer?

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2426709

Large-scale sequencing and the new animal phylogeny

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2426709

Adaptive evolution of bacterial metabolic networks by horizontal gene transfer.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2426709

Does a tree-like phylogeny only exist at the tips in the prokaryotes?

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2426709

Identification and phylogenetic sorting of bacterial lineages with universally conserved genes and proteins

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2426709

Patterns of bacterial gene movement.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2426709

Horizontal gene transfer accelerates genome innovation and evolution.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2426709

Why are the genomes of endosymbiotic bacteria so stable?

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2426709

The Evolutionary Origin of Xanthomonadales Genomes and the Nature of the Horizontal Gene Transfer Process

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2426709

Successful Lateral Transfer Requires Codon Usage Compatibility Between Foreign Genes and Recipient Genomes

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2426709

Genomes in Flux: The Evolution of Archaeal and Proteobacterial Gene Content

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2426709

The evolutionary history of ribosomal protein RpS14: horizontal gene transfer at the heart of the ribosome

31 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18492275

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Animal evolution and the molecular signature of radiations compressed in time

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18492275

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

PHYLOGENIES FROM RESTRICTION SITES: A MAXIMUM-LIKELIHOOD APPROACH.

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18492275

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2164-9-235

1 reference

PubMed ID

18492275

Dimensions Publication ID

25 July 2017

1 reference

https://scigraph.springernature.com/pub.10.1186/1471-2164-9-235

9 September 2019

1 reference

25 July 2017

1 reference

PubMed ID

18492275