Distinct light-initiated gene expression and cell cycle programs in the shoot apex and cotyledons of Arabidopsis. (Q33345472)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18424613%20AND%20SRC:MED&resulttype=core&format=json

6 January 2020

title

Distinct light-initiated gene expression and cell cycle programs in the shoot apex and cotyledons of Arabidopsis (English)

1 reference

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6 January 2020

1 reference

1

1 reference

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6 January 2020

James A.H. Murray

7

1 reference

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6 January 2020

Gerrit Beemster

8

1 reference

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6 January 2020

author name string

Edyta Dillon

2

1 reference

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6 January 2020

Zoltán Magyar

3

1 reference

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6 January 2020

Safina Khan

4

1 reference

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6 January 2020

Saul Hazeldine

5

1 reference

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6 January 2020

Sarah M de Jager

6

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6 January 2020

László Bögre

9

1 reference

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6 January 2020

Hugh Shanahan

10

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6 January 2020

publication date

18 April 2008

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6 January 2020

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6 January 2020

volume

20

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6 January 2020

issue

4

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6 January 2020

page(s)

947-968

1 reference

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Dawning of a new era: photomorphogenesis as an integrated molecular network

6 January 2020

cites work

1 reference

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Ethylene modulates stem cell division in the Arabidopsis thaliana root.

31 October 2018

1 reference

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The ins and outs of the plant cell cycle

31 October 2018

1 reference

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Ethylene upregulates auxin biosynthesis in Arabidopsis seedlings to enhance inhibition of root cell elongation

31 October 2018

1 reference

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Molecular characterisation of the STRUBBELIG-RECEPTOR FAMILY of genes encoding putative leucine-rich repeat receptor-like kinases in Arabidopsis thaliana.

31 October 2018

1 reference

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The Arabidopsis thaliana homolog of yeast BRE1 has a function in cell cycle regulation during early leaf and root growth

31 October 2018

1 reference

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TCP transcription factors control the morphology of shoot lateral organs via negative regulation of the expression of boundary-specific genes in Arabidopsis

31 October 2018

1 reference

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Arabidopsis BRANCHED1 acts as an integrator of branching signals within axillary buds

31 October 2018

1 reference

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Light-regulated transcriptional networks in higher plants

31 October 2018

1 reference

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Conservation, convergence, and divergence of light-responsive, circadian-regulated, and tissue-specific expression patterns during evolution of the Arabidopsis GATA gene family.

31 October 2018

1 reference

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Transcriptional profiling of the Arabidopsis embryo

31 October 2018

1 reference

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E2f1, E2f2, and E2f3 control E2F target expression and cellular proliferation via a p53-dependent negative feedback loop

31 October 2018

1 reference

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Opposite root growth phenotypes of hy5 versus hy5 hyh mutants correlate with increased constitutive auxin signaling

31 October 2018

1 reference

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phyA dominates in transduction of red-light signals to rapidly responding genes at the initiation of Arabidopsis seedling de-etiolation

31 October 2018

1 reference

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Retinoblastoma family genes

31 October 2018

1 reference

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The balance between cell division and endoreplication depends on E2FC-DPB, transcription factors regulated by the ubiquitin-SCFSKP2A pathway in Arabidopsis

31 October 2018

1 reference

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Functional profiling reveals that only a small number of phytochrome-regulated early-response genes in Arabidopsis are necessary for optimal deetiolation

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2390750

The role of hormones in shoot apical meristem function

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2390750

Induction of differentiation in the shoot apical meristem by transient overexpression of a retinoblastoma-related protein

31 October 2018

1 reference

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Systemic Endopolyploidy in Arabidopsis thaliana

31 October 2018

1 reference

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A basic leucine zipper transcription factor, G-box-binding factor 1, regulates blue light-mediated photomorphogenic growth in Arabidopsis

31 October 2018

1 reference

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FLOWERING LOCUS C mediates natural variation in the high-temperature response of the Arabidopsis circadian clock.

31 October 2018

1 reference

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Computer simulations reveal properties of the cell-cell signaling network at the shoot apex in Arabidopsis

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2390750

WUSCHEL controls meristem function by direct regulation of cytokinin-inducible response regulators.

31 October 2018

1 reference

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Integrating hormone signaling and patterning mechanisms in plant development

31 October 2018

1 reference

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The co-ordination of cell division, differentiation and morphogenesis in the shoot apical meristem: a perspective

31 October 2018

1 reference

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Growth of the plant cell wall

31 October 2018

1 reference

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Cell cycle progression in the pericycle is not sufficient for SOLITARY ROOT/IAA14-mediated lateral root initiation in Arabidopsis thaliana

31 October 2018

1 reference

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D-type cyclins activate division in the root apex to promote seed germination in Arabidopsis

31 October 2018

1 reference

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KNOX action in Arabidopsis is mediated by coordinate regulation of cytokinin and gibberellin activities

31 October 2018

1 reference

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Genome-wide identification of potential plant E2F target genes

31 October 2018

1 reference

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Arabidopsis TCP20 links regulation of growth and cell division control pathways

31 October 2018

1 reference

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The role of the Arabidopsis E2FB transcription factor in regulating auxin-dependent cell division.

31 October 2018

1 reference

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Coupling cell proliferation and development in plants.

31 October 2018

1 reference

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Identification of cis-elements that regulate gene expression during initiation of axillary bud outgrowth in Arabidopsis

31 October 2018

1 reference

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Organ-specific expression of Arabidopsis genome during development.

31 October 2018

1 reference

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Genome-wide analysis of gene expression profiles associated with cell cycle transitions in growing organs of Arabidopsis

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2390750

Global analysis of the core cell cycle regulators of Arabidopsis identifies novel genes, reveals multiple and highly specific profiles of expression and provides a coherent model for plant cell cycle control

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2390750

The phytochrome-interacting transcription factor, PIF3, acts early, selectively, and positively in light-induced chloroplast development

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2390750

Genome based identification and analysis of the pre-replicative complex of Arabidopsis thaliana.

31 October 2018

1 reference

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In planta functions of the Arabidopsis cytokinin receptor family

31 October 2018

1 reference

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Expression profiling of phyB mutant demonstrates substantial contribution of other phytochromes to red-light-regulated gene expression during seedling de-etiolation

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2390750

Analysis of the spatial expression pattern of seven Kip related proteins (KRPs) in the shoot apex of Arabidopsis thaliana

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2390750

Functional analysis of each blue light receptor, cry1, cry2, phot1, and phot2, by using combinatorial multiple mutants in Arabidopsis

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2390750

LRR-containing receptors regulating plant development and defense.

31 October 2018

1 reference

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A genomic analysis of the shade avoidance response in Arabidopsis

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2390750

The diverse roles of ubiquitin and the 26S proteasome in the life of plants

31 October 2018

1 reference

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31 October 2018

1 reference

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The COP9 Signalosome Promotes Degradation of Cyclin E during Early Drosophila Oogenesis

31 October 2018

1 reference

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Internal telomeric repeats and 'TCP domain' protein-binding sites co-operate to regulate gene expression in Arabidopsis thaliana cycling cells.

31 October 2018

1 reference

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Altered cell cycle distribution, hyperplasia, and inhibited differentiation in Arabidopsis caused by the D-type cyclin CYCD3.

31 October 2018

1 reference

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Arabidopsis E2Fc functions in cell division and is degraded by the ubiquitin-SCF(AtSKP2) pathway in response to light

31 October 2018

1 reference

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Modeling transcriptional regulatory networks

31 October 2018

1 reference

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VH1, a provascular cell-specific receptor kinase that influences leaf cell patterns in Arabidopsis.

31 October 2018

1 reference

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The gibberellin pathway mediates KNOTTED1-type homeobox function in plants with different body plans

31 October 2018

1 reference

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Genomic evidence for COP1 as a repressor of light-regulated gene expression and development in Arabidopsis.

31 October 2018

1 reference

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A Role for Cytokinins in De-Etiolation in Arabidopsis (det Mutants Have an Altered Response to Cytokinins).

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2390750

GLK gene pairs regulate chloroplast development in diverse plant species.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2390750

Variance stabilization applied to microarray data calibration and to the quantification of differential expression

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2390750

Two interacting bZIP proteins are direct targets of COP1-mediated control of light-dependent gene expression in Arabidopsis

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2390750

GATEWAY vectors for Agrobacterium-mediated plant transformation

31 October 2018

1 reference

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Genome-wide analysis of core cell cycle genes in Arabidopsis

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2390750

Control of proliferation, endoreduplication and differentiation by the Arabidopsis E2Fa-DPa transcription factor

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2390750

Arabidopsis SHY2/IAA3 inhibits auxin-regulated gene expression

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2390750

Light control of Arabidopsis development entails coordinated regulation of genome expression and cellular pathways.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2390750

Hierarchical coupling of phytochromes and cryptochromes reconciles stability and light modulation of Arabidopsis development.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2390750

Reciprocal regulation between TOC1 and LHY/CCA1 within the Arabidopsis circadian clock.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2390750

BIG: a calossin-like protein required for polar auxin transport in Arabidopsis

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2390750

Multiple transcription-factor genes are early targets of phytochrome A signaling

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2390750

A new mathematical model for relative quantification in real-time RT-PCR

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2390750

Light quantity controls leaf-cell and chloroplast development in Arabidopsis thaliana wild type and blue-light-perception mutants.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2390750

Orchestrated transcription of key pathways in Arabidopsis by the circadian clock

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2390750

Characterization of two distinct DP-related genes from Arabidopsis thaliana

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2390750

Targeted destabilization of HY5 during light-regulated development of Arabidopsis.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2390750

Technical advance: spatio-temporal analysis of mitotic activity with a labile cyclin-GUS fusion protein

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2390750

SPA1, a WD-repeat protein specific to phytochrome A signal transduction

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2390750

The Arabidopsis photomorphogenic mutant hy1 is deficient in phytochrome chromophore biosynthesis as a result of a mutation in a plastid heme oxygenase

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2390750

Phytochrome regulation and differential expression of gibberellin 3beta-hydroxylase genes in germinating Arabidopsis seeds

31 October 2018

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2390750

31 October 2018

12 December 2020

Phytochrome controls the number of endoreduplication cycles in the Arabidopsis thaliana hypocotyl

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2390750

Regulation of flowering time by Arabidopsis photoreceptors

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2390750

Cell cycle phase specificity of putative cyclin-dependent kinase variants in synchronized alfalfa cells

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2390750

A role for brassinosteroids in light-dependent development of Arabidopsis

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2390750

HY4 gene of A. thaliana encodes a protein with characteristics of a blue-light photoreceptor

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2390750

Arabidopsis thaliana mutant that develops as a light-grown plant in the absence of light

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2390750

cop1: a regulatory locus involved in light-controlled development and gene expression in Arabidopsis.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2390750

Connections between growth and the cell cycle

31 October 2018

1 reference

12 December 2020

Different plant hormones regulate similar processes through largely nonoverlapping transcriptional responses

1 reference

12 December 2020

The RETINOBLASTOMA-RELATED Gene Regulates Stem Cell Maintenance in Arabidopsis Roots

1 reference

12 December 2020

The central coiled-coil domain and carboxyl-terminal WD-repeat domain of Arabidopsis SPA1 are responsible for mediating repression of light signaling

1 reference

12 December 2020

Auxin response factors mediate Arabidopsis organ asymmetry via modulation of KANADI activity

1 reference

12 December 2020

Interactions between hy1 and gun mutants of Arabidopsis, and their implications for plastid/nuclear signalling

1 reference

12 December 2020

A role for ethylene in the phytochrome-mediated control of vegetative development

1 reference

12 December 2020