Large gene overlaps in prokaryotic genomes: result of functional constraints or mispredictions? (Q33351790)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18627618%20AND%20SRC:MED&resulttype=core&format=json

10 January 2020

title

Large gene overlaps in prokaryotic genomes: result of functional constraints or mispredictions? (English)

1 reference

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10 January 2020

3

1 reference

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10 January 2020

Albert Palleja

series ordinal

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18627618%20AND%20SRC:MED&resulttype=core&format=json

10 January 2020

author name string

Eoghan D Harrington

series ordinal

2

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10 January 2020

language of work or name

English

0 references

publication date

15 July 2008

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18627618%20AND%20SRC:MED&resulttype=core&format=json

10 January 2020

1 reference

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10 January 2020

volume

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18627618%20AND%20SRC:MED&resulttype=core&format=json

10 January 2020

page(s)

335

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Quantitative assessment of protein function prediction from metagenomics shotgun sequences

10 January 2020

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1 reference

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21 June 2018

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The life-cycle of operons

21 June 2018

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Predicting Shine-Dalgarno sequence locations exposes genome annotation errors

21 June 2018

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From genomics to chemical genomics: new developments in KEGG

21 June 2018

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21 June 2018

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21 June 2018

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Comparative study of overlapping genes in bacteria, with special reference to Rickettsia prowazekii and Rickettsia conorii

21 June 2018

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Comparative metagenomics of microbial communities

21 June 2018

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Properties of overlapping genes are conserved across microbial genomes

21 June 2018

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21 June 2018

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21 June 2018

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Automated annotation of microbial proteomes in SWISS-PROT.

21 June 2018

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Congruent evolution of different classes of non-coding DNA in prokaryotic genomes

21 June 2018

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Correlations between Shine-Dalgarno sequences and gene features such as predicted expression levels and operon structures

21 June 2018

1 reference

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Purifying and directional selection in overlapping prokaryotic genes

21 June 2018

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Genome alignment, evolution of prokaryotic genome organization, and prediction of gene function using genomic context

21 June 2018

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Using the COG database to improve gene recognition in complete genomes

21 June 2018

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Improved microbial gene identification with GLIMMER

21 June 2018

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Comparative study of overlapping genes in the genomes of Mycoplasma genitalium and Mycoplasma pneumoniae

21 June 2018

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Conservation of gene order: a fingerprint of proteins that physically interact

21 June 2018

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Identification, isolation, and overexpression of the gene encoding the psi subunit of DNA polymerase III holoenzyme

21 June 2018

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The distance between Escherichia coli genes is related to gene expression levels

21 June 2018

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21 June 2018

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Translation initiation in Escherichia coli: sequences within the ribosome-binding site

21 June 2018

1 reference

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Overlapping genes in bacteriophage phiX174

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2478687

Nucleotide sequence of bacteriophage φX174 DNA

21 June 2018

1 reference

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A powerful non-homology method for the prediction of operons in prokaryotes.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2478687

Use of contiguity on the chromosome to predict functional coupling.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2478687

On dynamics of overlapping genes in bacterial genomes

31 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18627618

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Evolution of Gene Overlaps: Relative Reading Frame Bias in Prokaryotic Two-Component System Genes

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18627618

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Genome size and operon content

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18627618

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2164-9-335

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18627618%20AND%20SRC:MED&resulttype=core&format=json

Dimensions Publication ID

10 January 2020

1 reference

https://scigraph.springernature.com/pub.10.1186/1471-2164-9-335

9 September 2019

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18627618%20AND%20SRC:MED&resulttype=core&format=json

10 January 2020

PubMed publication ID

18627618

1 reference