Hundreds of putatively functional small open reading frames in Drosophila (Q33352612)

26 July 2017

Hundreds of putatively functional small open reading frames in Drosophila (English)

1 reference

26 July 2017

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4

1 reference

26 July 2017

Emile G Magny

3

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author name string

Emmanuel Ladoukakis

series ordinal

1

1 reference

26 July 2017

Vini Pereira

series ordinal

2

1 reference

26 July 2017

Juan Pablo Couso

series ordinal

5

1 reference

26 July 2017

25 November 2011

1 reference

26 July 2017

1 reference

26 July 2017

12

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26 July 2017

11

1 reference

26 July 2017

R118

1 reference

https://scigraph.springernature.com/pub.10.1186/gb-2011-12-11-r118

26 July 2017

0 references

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Peptidomic approaches to the identification and characterization of functional peptides in Hydra

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3334604

Mass spectrometric profiling of (neuro)-peptides in the worker honeybee, Apis mellifera

14 July 2018

1 reference

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Evolutionary genomics and the reach of selection

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3334604

The transcriptional landscape of the yeast genome defined by RNA sequencing

14 July 2018

1 reference

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Identification of novel conserved peptide uORF homology groups in Arabidopsis and rice reveals ancient eukaryotic origin of select groups and preferential association with transcription factor-encoding genes

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3334604

Small peptide regulators of actin-based cell morphogenesis encoded by a polycistronic mRNA.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3334604

Peptides encoded by short ORFs control development and define a new eukaryotic gene family

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3334604

Why are there still over 1000 uncharacterized yeast genes?

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3334604

A large number of novel coding small open reading frames in the intergenic regions of the Arabidopsis thaliana genome are transcribed and/or under purifying selection

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3334604

From the genome to the proteome: uncovering peptides in the Apis brain.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3334604

An RNA gene expressed during cortical development evolved rapidly in humans

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3334604

Characterization of the Drosophila melanogaster ribosomal proteome

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3334604

Ubiquitous selective constraints in the Drosophila genome revealed by a genome-wide interspecies comparison

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3334604

The abundance of short proteins in the mammalian proteome

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3334604

The cryptome: a subset of the proteome, comprising cryptic peptides with distinct bioactivities

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3334604

Functional genomics of genes with small open reading frames (sORFs) in S. cerevisiae

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3334604

Genome annotation past, present, and future: how to define an ORF at each locus

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3334604

Regulation of translation via mRNA structure in prokaryotes and eukaryotes

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3334604

Peptidomics: a logical sequel to proteomics

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3334604

Overview of innate immunity in Drosophila

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3334604

Identification of putative noncoding polyadenylated transcripts in Drosophila melanogaster

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3334604

Comparative genome sequencing of Drosophila pseudoobscura: chromosomal, gene, and cis-element evolution

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3334604

Peptidomics in Drosophila melanogaster.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3334604

An integrated gene annotation and transcriptional profiling approach towards the full gene content of the Drosophila genome

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3334604

Vertebrate gene predictions and the problem of large genes

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3334604

Reinvestigation of the Saccharomyces cerevisiae genome annotation by comparison to the genome of a related fungus: Ashbya gossypii

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3334604

Finding Functional Features in Saccharomyces Genomes by Phylogenetic Footprinting

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3334604

Sequencing and comparison of yeast species to identify genes and regulatory elements

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3334604

Messenger RNA surveillance and the evolutionary proliferation of introns

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3334604

Systematic discovery of new genes in the Saccharomyces cerevisiae genome

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3334604

Systematic determination of patterns of gene expression during Drosophila embryogenesis

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3334604

Annotation of the Drosophila melanogaster euchromatic genome: a systematic review

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3334604

Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3334604

Adaptive protein evolution in Drosophila

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3334604

The K(A)/K(S) ratio test for assessing the protein-coding potential of genomic regions: an empirical and simulation study

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3334604

Analysis of conserved noncoding DNA in Drosophila reveals similar constraints in intergenic and intronic sequences.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3334604

An exploration of the sequence of a 2.9-Mb region of the genome of Drosophila melanogaster: the Adh region

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3334604

The FlyBase database of the Drosophila Genome Projects and community literature

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3334604

Differential display of peptides induced during the immune response of Drosophila: a matrix-assisted laser desorption ionization time-of-flight mass spectrometry study

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3334604

The difficulty of identifying genes in anonymous vertebrate sequences

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3334604

Analysis of the yeast genome: identification of new non-coding and small ORF-containing RNAs

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3334604

Biology's new Rosetta stone

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3334604

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3334604

A Gene Map of the Human Genome

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3334604

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3334604

Serial analysis of gene expression

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3334604

DNA of Drosophila chromosomes

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3334604

"Silent" sites in Drosophila genes are not neutral: evidence of selection among synonymous codons

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3334604

Basic local alignment search tool

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3334604

The number of genes in Drosophila melanogaster

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3334604

Identification and characterization of upstream open reading frames (uORF) in the 5' untranslated regions (UTR) of genes in Saccharomyces cerevisiae.

14 July 2018

1 reference

https://api.crossref.org/works/10.1186%2FGB-2011-12-11-R118

Yeast. Genes in search of functions.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FGB-2011-12-11-R118

A segmentation gene in tribolium produces a polycistronic mRNA that codes for multiple conserved peptides

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FGB-2011-12-11-R118

Adaptive evolution of non-coding DNA in Drosophila

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FGB-2011-12-11-R118

Biological function of unannotated transcription during the early development of Drosophila melanogaster

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FGB-2011-12-11-R118

The relationship between non-protein-coding DNA and eukaryotic complexity.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FGB-2011-12-11-R118

Genomic exploration of the hemiascomycetous yeasts: 4. The genome of Saccharomyces cerevisiae revisited.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FGB-2011-12-11-R118

A gene expression map for the euchromatic genome of Drosophila melanogaster.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FGB-2011-12-11-R118

A receptor that mediates the post-mating switch in Drosophila reproductive behaviour.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FGB-2011-12-11-R118

Proteome profiling for assessing diversity: analysis of individual heads of Drosophila melanogaster using LC-ion mobility-MS.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FGB-2011-12-11-R118

Characterization of the Drosophila lipid droplet subproteome.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FGB-2011-12-11-R118

Peptidomics of the larval Drosophila melanogaster central nervous system.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FGB-2011-12-11-R118

The 11-aminoacid long Tarsal-less peptides trigger a cell signal in Drosophila leg development.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3334604

Small open reading frames: beautiful needles in the haystack.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3334604

Transcriptome analysis of Saccharomyces cerevisiae using serial analysis of gene expression

31 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22118156

12 December 2020

inferred from PubMed ID database lookup

ORFs and genes: how strong a connection?

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22118156

12 December 2020

inferred from PubMed ID database lookup

Human genome: end of the beginning

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22118156

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1186/GB-2011-12-11-R118

1 reference

Dimensions Publication ID

26 July 2017

1019802586

0 references

Fatcat ID

release_eo66atlfbzggtgo4xwejrs3ytq

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/eo66atlfbzggtgo4xwejrs3ytq

24 November 2022

mapped directly with Wikidata item

PMCID

3334604

1 reference

26 July 2017

1 reference