Systematic analysis of plant-specific B3 domain-containing proteins based on the genome resources of 11 sequenced species (Q33352954)

26 July 2017

title

Systematic analysis of plant-specific B3 domain-containing proteins based on the genome resources of 11 sequenced species (English)

1 reference

26 July 2017

Zhitong Yin

6

1 reference

ORCID Public Data File 2021

author name string

Yijun Wang

1

1 reference

26 July 2017

Dexiang Deng

2

1 reference

26 July 2017

Rong Zhang

3

1 reference

26 July 2017

Suxin Wang

4

1 reference

26 July 2017

Yunlong Bian

5

1 reference

26 July 2017

publication date

1 May 2012

1 reference

Molecular Biology Reports

26 July 2017

published in

1 reference

26 July 2017

volume

39

1 reference

26 July 2017

issue

5

1 reference

26 July 2017

page(s)

6267-6282

1 reference

The conserved B3 domain of VIVIPAROUS1 has a cooperative DNA binding activity

26 July 2017

cites work

1 reference

https://api.crossref.org/works/10.1007%2FS11033-012-1448-8

21 January 2018

The plant B3 superfamily

1 reference

https://api.crossref.org/works/10.1007%2FS11033-012-1448-8

Arabidopsis LEAFY COTYLEDON2 induces maturation traits and auxin activity: Implications for somatic embryogenesis

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11033-012-1448-8

LEAFY COTYLEDON2 encodes a B3 domain transcription factor that induces embryo development.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11033-012-1448-8

FUSCA3 encodes a protein with a conserved VP1/AB13-like B3 domain which is of functional importance for the regulation of seed maturation in Arabidopsis thaliana

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11033-012-1448-8

The ABSCISIC ACID INSENSITIVE 3 (ABI3) gene is modulated by farnesylation and is involved in auxin signaling and lateral root development in Arabidopsis

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11033-012-1448-8

ABI3 affects plastid differentiation in dark-grown Arabidopsis seedlings

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11033-012-1448-8

Global analysis of gene activity during Arabidopsis seed development and identification of seed-specific transcription factors

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11033-012-1448-8

The ABSCISIC ACID-INSENSITIVE3, FUSCA3, and LEAFY COTYLEDON1 loci act in concert to control multiple aspects of Arabidopsis seed development.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11033-012-1448-8

Deciphering gene regulatory networks that control seed development and maturation in Arabidopsis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11033-012-1448-8

Repression of the LEAFY COTYLEDON 1/B3 regulatory network in plant embryo development by VP1/ABSCISIC ACID INSENSITIVE 3-LIKE B3 genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11033-012-1448-8

Two B3 domain transcriptional repressors prevent sugar-inducible expression of seed maturation genes in Arabidopsis seedlings

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11033-012-1448-8

Analysis of a sugar response mutant of Arabidopsis identified a novel B3 domain protein that functions as an active transcriptional repressor

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11033-012-1448-8

LECs go crazy in embryo development

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11033-012-1448-8

Efficient LEC2 activation of OLEOSIN expression requires two neighboring RY elements on its promoter

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11033-012-1448-8

AtGA3ox2, a key gene responsible for bioactive gibberellin biosynthesis, is regulated during embryogenesis by LEAFY COTYLEDON2 and FUSCA3 in Arabidopsis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11033-012-1448-8

Seed-specific transcription factors ABI3 and FUS3: molecular interaction with DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11033-012-1448-8

Functional symmetry of the B3 network controlling seed development

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11033-012-1448-8

RAV1, a novel DNA-binding protein, binds to bipartite recognition sequence through two distinct DNA-binding domains uniquely found in higher plants

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11033-012-1448-8

Arabidopsis RAV1 is down-regulated by brassinosteroid and may act as a negative regulator during plant development

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11033-012-1448-8

The RAV1 transcription factor positively regulates leaf senescence in Arabidopsis

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11033-012-1448-8

The balance between CONSTANS and TEMPRANILLO activities determines FT expression to trigger flowering

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11033-012-1448-8

Arabidopsis transcription factors, RAV1 and RAV2, are regulated by touch-related stimuli in a dose-dependent and biphasic manner

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11033-012-1448-8

The NGATHA distal organ development genes are essential for style specification in Arabidopsis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11033-012-1448-8

The NGATHA genes direct style development in the Arabidopsis gynoecium

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11033-012-1448-8

Dynamic, auxin-responsive plasma membrane-to-nucleus movement of Arabidopsis BRX.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11033-012-1448-8

RAV-Like1 maintains brassinosteroid homeostasis via the coordinated activation of BRI1 and biosynthetic genes in rice

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11033-012-1448-8

A RAV-like transcription factor controls photosynthesis and senescence in soybean

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11033-012-1448-8

Overexpression of a Brassica rapa NGATHA gene in Arabidopsis thaliana negatively affects cell proliferation during lateral organ and root growth.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11033-012-1448-8

ARF1, a transcription factor that binds to auxin response elements

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11033-012-1448-8

Genome-wide analysis of Aux/IAA and ARF gene families in Populus trichocarpa

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11033-012-1448-8

Genome-wide analysis of the auxin response factors (ARF) gene family in rice (Oryza sativa).

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11033-012-1448-8

21 January 2018

Auxin response factors

1 reference

https://api.crossref.org/works/10.1007%2FS11033-012-1448-8

The roles of auxin response factor domains in auxin-responsive transcription

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11033-012-1448-8

Genetics of Aux/IAA and ARF action in plant growth and development.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11033-012-1448-8

Auxin response factor 2 (ARF2) plays a major role in regulating auxin-mediated leaf longevity

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11033-012-1448-8

The AUXIN RESPONSE FACTOR 2 gene of Arabidopsis links auxin signalling, cell division, and the size of seeds and other organs

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11033-012-1448-8

The Arabidopsis gene MONOPTEROS encodes a transcription factor mediating embryo axis formation and vascular development.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11033-012-1448-8

DORNROSCHEN is a direct target of the auxin response factor MONOPTEROS in the Arabidopsis embryo

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11033-012-1448-8

Arabidopsis auxin response factor6 and 8 regulate jasmonic acid biosynthesis and floral organ development via repression of class 1 KNOX genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11033-012-1448-8

AUXIN RESPONSE FACTOR8 is a negative regulator of fruit initiation in Arabidopsis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11033-012-1448-8

A role for auxin response factor 19 in auxin and ethylene signaling in Arabidopsis

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11033-012-1448-8

Functional genomic analysis of the AUXIN RESPONSE FACTOR gene family members in Arabidopsis thaliana: unique and overlapping functions of ARF7 and ARF19.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11033-012-1448-8

Identification of genes specifically expressed in cauliflower reproductive meristems. Molecular characterization of BoREM1.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11033-012-1448-8

AtREM1, a member of a new family of B3 domain-containing genes, is preferentially expressed in reproductive meristems

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11033-012-1448-8

Arabidopsis mutants showing an altered response to vernalization

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11033-012-1448-8

Multiple roles of Arabidopsis VRN1 in vernalization and flowering time control.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11033-012-1448-8

VERDANDI is a direct target of the MADS domain ovule identity complex and affects embryo sac differentiation in Arabidopsis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11033-012-1448-8

Evolution of the B3 DNA binding superfamily: new insights into REM family gene diversification

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11033-012-1448-8

Genome-wide analysis of primary auxin-responsive Aux/IAA gene family in maize (Zea mays. L.).

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11033-012-1448-8

The Pfam protein families database

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11033-012-1448-8

A probabilistic model of local sequence alignment that simplifies statistical significance estimation

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11033-012-1448-8

InterPro: the integrative protein signature database

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11033-012-1448-8

GSDS: a gene structure display server

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11033-012-1448-8

Clustal W and Clustal X version 2.0

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11033-012-1448-8

MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) Software Version 4.0

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11033-012-1448-8

CDD: specific functional annotation with the Conserved Domain Database

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11033-012-1448-8

The SWISS-MODEL Repository and associated resources

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11033-012-1448-8

SuperPose: a simple server for sophisticated structural superposition

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11033-012-1448-8

Widespread paleopolyploidy in model plant species inferred from age distributions of duplicate genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11033-012-1448-8

Substitution rate comparisons between grasses and palms: synonymous rate differences at the nuclear gene Adh parallel rate differences at the plastid gene rbcL

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11033-012-1448-8

Comparative evolutionary analysis of chalcone synthase and alcohol dehydrogenase loci in Arabidopsis, Arabis, and related genera (Brassicaceae)

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11033-012-1448-8

PAL2NAL: robust conversion of protein sequence alignments into the corresponding codon alignments

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11033-012-1448-8

Structure of the B3 domain from Arabidopsis thaliana protein At1g16640

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11033-012-1448-8

Solution structure of the B3 DNA binding domain of the Arabidopsis cold-responsive transcription factor RAV1

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11033-012-1448-8

Structural mechanisms for the 5'-CCWGG sequence recognition by the N- and C-terminal domains of EcoRII

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11033-012-1448-8

Comprehensive analysis of NAC domain transcription factor gene family in Populus trichocarpa

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11033-012-1448-8

Large-scale analysis of the GRAS gene family in Arabidopsis thaliana

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11033-012-1448-8

Genome-scale identification of Soybean BURP domain-containing genes and their expression under stress treatments

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11033-012-1448-8

Functional analysis of the structural domain of ARF proteins in rice (Oryza sativa L.)

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11033-012-1448-8

Lineage-specific expansion of DNA-binding transcription factor families

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11033-012-1448-8

The CW domain, a structural module shared amongst vertebrates, vertebrate-infecting parasites and higher plants

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11033-012-1448-8

The APETALA2 domain is related to a novel type of DNA binding domain.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11033-012-1448-8

The life and death of gene families

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11033-012-1448-8

Genes directly regulated by LEAFY COTYLEDON2 provide insight into the control of embryo maturation and somatic embryogenesis

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11033-012-1448-8

The transcription factor FUSCA3 controls developmental timing in Arabidopsis through the hormones gibberellin and abscisic acid.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11033-012-1448-8

Integration of auxin and brassinosteroid pathways by Auxin Response Factor 2.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11033-012-1448-8

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11033-012-1448-8

miR390, Arabidopsis TAS3 tasiRNAs, and their AUXIN RESPONSE FACTOR targets define an autoregulatory network quantitatively regulating lateral root growth.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11033-012-1448-8

Arabidopsis microRNA167 controls patterns of ARF6 and ARF8 expression, and regulates both female and male reproduction.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11033-012-1448-8

Contrasting modes of diversification in the Aux/IAA and ARF gene families

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11033-012-1448-8

Dating the monocot-dicot divergence and the origin of core eudicots using whole chloroplast genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11033-012-1448-8

Grass genome organization and evolution

21 January 2018

1 reference

12 December 2020

ETTIN patterns the Arabidopsis floral meristem and reproductive organs

1 reference

12 December 2020

LEAFY COTYLEDON2 gene expression and auxin treatment in relation to embryogenic capacity of Arabidopsis somatic cells

1 reference

12 December 2020

Convergence of signaling pathways in the control of differential cell growth in Arabidopsis

1 reference

12 December 2020

Control of root cap formation by MicroRNA-targeted auxin response factors in Arabidopsis

1 reference

12 December 2020

Arabidopsis transcriptome profiling indicates that multiple regulatory pathways are activated during cold acclimation in addition to the CBF cold response pathway

1 reference

12 December 2020

The role of ABI3 and FUS3 loci in Arabidopsis thaliana on phase transition from late embryo development to germination

1 reference

12 December 2020

The NPH4 locus encodes the auxin response factor ARF7, a conditional regulator of differential growth in aerial Arabidopsis tissue

1 reference

12 December 2020

K-Estimator: calculation of the number of nucleotide substitutions per site and the confidence intervals

1 reference

12 December 2020

Phenotypic plasticity of adventitious rooting in Arabidopsis is controlled by complex regulation of AUXIN RESPONSE FACTOR transcripts and microRNA abundance

1 reference

12 December 2020

Diversification, phylogeny and evolution of auxin response factor (ARF) family: insights gained from analyzing maize ARF genes

1 reference

12 December 2020

10.1007/S11033-012-1448-8

Identifiers

DOI

1 reference

Dimensions Publication ID

26 July 2017

1016219908

0 references

1 reference