WebScipio: an online tool for the determination of gene structures using protein sequences (Q33370393)

26 July 2017

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title

WebScipio: an online tool for the determination of gene structures using protein sequences (English)

1 reference

26 July 2017

Florian Odronitz

1

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26 July 2017

Holger Pillmann

2

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26 July 2017

Oliver Keller

3

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26 July 2017

Stephan Waack

4

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26 July 2017

Martin Kollmar

5

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26 July 2017

language of work or name

English

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publication date

18 September 2008

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full work available at URL

26 July 2017

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2644328

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published in

BMC Genomics

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26 July 2017

volume

9

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26 July 2017

page(s)

422

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Scipio: using protein sequences to determine the precise exon/intron structures of genes and their orthologs in closely related species

26 July 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2644328

The UCSC Genome Browser Database: 2008 update

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2644328

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2644328

Drawing the tree of eukaryotic life based on the analysis of 2,269 manually annotated myosins from 328 species

21 June 2018

1 reference

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Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

21 June 2018

1 reference

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The ENCODEdb portal: simplified access to ENCODE Consortium data

21 June 2018

1 reference

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diArk--a resource for eukaryotic genome research

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2644328

Non-coding sequence retrieval system for comparative genomic analysis of gene regulatory elements

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2644328

Identification of regulatory elements by gene family footprinting and in vivo analysis.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2644328

The UCSC genome browser database: update 2007.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2644328

Pfarao: a web application for protein family analysis customized for cytoskeletal and motor proteins (CyMoBase)

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2644328

Functional variation and evolution of non-coding DNA.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2644328

Multi-species sequence comparison: the next frontier in genome annotation

21 June 2018

1 reference

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Comparative genomics: genome-wide analysis in metazoan eukaryotes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2644328

Comparison of mouse and human genomes followed by experimental verification yields an estimated 1,019 additional genes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2644328

Initial sequencing and comparative analysis of the mouse genome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2644328

BLAT—The BLAST-Like Alignment Tool

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2644328

Basic local alignment search tool

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2644328

Comparative cross-species alternative splicing in plants

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2644328

RRE: a tool for the extraction of non-coding regions surrounding annotated genes from genomic datasets

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2644328

31 October 2018

Identifiers

DOI

10.1186/1471-2164-9-422

1 reference

Dimensions Publication ID

26 July 2017

1 reference

https://scigraph.springernature.com/pub.10.1186/1471-2164-9-422

release_zlp7tq47obdkrjkbfx43frue3m

9 September 2019

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/zlp7tq47obdkrjkbfx43frue3m

mapped directly with Wikidata item

24 November 2022

based on heuristic

PMC publication ID

2644328

1 reference

26 July 2017

1 reference