Synchronous visual analysis and editing of RNA sequence and secondary structure alignments using 4SALE. (Q33375848)

26 July 2017

Synchronous visual analysis and editing of RNA sequence and secondary structure alignments using 4SALE. (English)

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26 July 2017

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26 July 2017

Philipp N Seibel

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26 July 2017

Tobias Müller

series ordinal

2

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26 July 2017

Matthias Wolf

series ordinal

4

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26 July 2017

language of work or name

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14 October 2008

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26 July 2017

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26 July 2017

1

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26 July 2017

91

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https://scigraph.springernature.com/pub.10.1186/1756-0500-1-91

26 July 2017

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Accurate multiple sequence-structure alignment of RNA sequences using combinatorial optimization

21 June 2018

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RNA Movies 2: sequential animation of RNA secondary structures

21 June 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2587473

4SALE--a tool for synchronous RNA sequence and secondary structure alignment and editing

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2587473

Pure multiple RNA secondary structure alignments: a progressive profile approach

21 June 2018

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The internal transcribed spacer 2 database--a web server for (not only) low level phylogenetic analyses

21 June 2018

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CorreLogo: an online server for 3D sequence logos of RNA and DNA alignments

21 June 2018

1 reference

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Graphical exploratory data analysis of RNA secondary structure dynamics predicted by the massively parallel genetic algorithm

21 June 2018

1 reference

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SCARNA: fast and accurate structural alignment of RNA sequences by matching fixed-length stem fragments

21 June 2018

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JViz.Rna--a Java tool for RNA secondary structure visualization

21 June 2018

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MARNA: multiple alignment and consensus structure prediction of RNAs based on sequence structure comparisons.

21 June 2018

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Sequence to Structure (S2S): display, manipulate and interconnect RNA data from sequence to structure

21 June 2018

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A common core of secondary structure of the internal transcribed spacer 2 (ITS2) throughout the Eukaryota

21 June 2018

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RALEE--RNA ALignment editor in Emacs

21 June 2018

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Dynalign: an algorithm for finding the secondary structure common to two RNA sequences

21 June 2018

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The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools

21 June 2018

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CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

21 June 2018

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Sequence logos: a new way to display consensus sequences

21 June 2018

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The ITS2 Database II: homology modelling RNA structure for molecular systematics

21 June 2018

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RnaViz 2: an improved representation of RNA secondary structure.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2587473

A vector-based method for drawing RNA secondary structure.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2587473

Displaying the information contents of structural RNA alignments: the structure logos.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2587473

An improved algorithm for nucleic acid secondary structure display

31 October 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2587473

ProfDist: a tool for the construction of large phylogenetic trees based on profile distances

31 October 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2587473

DCSE, an interactive tool for sequence alignment and secondary structure research

31 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18854023

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1756-0500-1-91

1 reference

Dimensions Publication ID

26 July 2017

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1 reference

26 July 2017

1 reference