Predicting protein post-translational modifications using meta-analysis of proteome scale data sets (Q33381458)

26 July 2017

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Predicting protein post-translational modifications using meta-analysis of proteome scale data sets (English)

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26 July 2017

1 reference

George M Church

3

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author name string

Daniel Schwartz

series ordinal

1

1 reference

PubMed ID

18974045

26 July 2017

Michael F Chou

series ordinal

2

1 reference

26 July 2017

28 October 2008

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Molecular & Cellular Proteomics

26 July 2017

1 reference

26 July 2017

8

1 reference

26 July 2017

365-379

1 reference

26 July 2017

2

1 reference

Linear Motif Atlas for Phosphorylation-Dependent Signaling

26 July 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2634583

Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2634583

A multidimensional chromatography technology for in-depth phosphoproteome analysis

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2634583

Phosphoproteome of resting human platelets

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2634583

The age of crosstalk: phosphorylation, ubiquitination, and beyond

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2634583

The universal protein resource (UniProt)

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2634583

PHOSIDA (phosphorylation site database): management, structural and evolutionary investigation, and prediction of phosphosites

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2634583

Signal-induced functions of the transcription factor TFII-I.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2634583

PhosphoPep--a phosphoproteome resource for systems biology research in Drosophila Kc167 cells

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2634583

A differential phosphoproteomic analysis of retinoic acid-treated P19 cells.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2634583

Proteome-wide identification of in vivo targets of DNA damage checkpoint kinases

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2634583

ATM and ATR substrate analysis reveals extensive protein networks responsive to DNA damage

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2634583

Profiling signaling polarity in chemotactic cells.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2634583

Liquid chromatography electron capture dissociation tandem mass spectrometry (LC-ECD-MS/MS) versus liquid chromatography collision-induced dissociation tandem mass spectrometry (LC-CID-MS/MS) for the identification of proteins

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2634583

Global proteomic profiling of phosphopeptides using electron transfer dissociation tandem mass spectrometry.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2634583

pkaPS: prediction of protein kinase A phosphorylation sites with the simplified kinase-substrate binding model

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2634583

A phosphoproteomic analysis of the ErbB2 receptor tyrosine kinase signaling pathways

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2634583

Global, in vivo, and site-specific phosphorylation dynamics in signaling networks

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2634583

Substrate and functional diversity of lysine acetylation revealed by a proteomics survey

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2634583

Enhanced sequence coverage of proteins in human cerebrospinal fluid using multiple enzymatic digestion and linear ion trap LC-MS/MS.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2634583

Polo-like kinase Cdc5 controls the local activation of Rho1 to promote cytokinesis.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2634583

PPSP: prediction of PK-specific phosphorylation site with Bayesian decision theory

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2634583

An iterative statistical approach to the identification of protein phosphorylation motifs from large-scale data sets

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2634583

The use of a hybrid linear trap/FT-ICR mass spectrometer for on-line high resolution/high mass accuracy bottom-up sequencing.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2634583

ARAP3 is transiently tyrosine phosphorylated in cells attaching to fibronectin and inhibits cell spreading in a RhoGAP-dependent manner

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2634583

Prediction of post-translational glycosylation and phosphorylation of proteins from the amino acid sequence

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2634583

PhosphoSite: A bioinformatics resource dedicated to physiological protein phosphorylation

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2634583

Analysis of the interaction between piD261/Bud32, an evolutionarily conserved protein kinase of Saccharomyces cerevisiae, and the Grx4 glutaredoxin

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2634583

Scansite 2.0: Proteome-wide prediction of cell signaling interactions using short sequence motifs

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2634583

Structural basis and prediction of substrate specificity in protein serine/threonine kinases

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2634583

Hitting the target: emerging technologies in the search for kinase substrates

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2634583

A duplicated gene in the breakpoint regions of the 7q11.23 Williams-Beuren syndrome deletion encodes the initiator binding protein TFII-I and BAP-135, a phosphorylation target of BTK

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2634583

Phosphorylation of Sic1p by G1 Cdk required for its degradation and entry into S phase

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2634583

Phosphoproteome analysis of Drosophila melanogaster embryos

14 July 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M800332-MCP200

Phospho.ELM: a database of phosphorylation sites--update 2008.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M800332-MCP200

NetPhosYeast: prediction of protein phosphorylation sites in yeast.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M800332-MCP200

Phosphoproteome profiling of human skin fibroblast cells in response to low- and high-dose irradiation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M800332-MCP200

Yeast holoenzyme of protein kinase CK2 requires both beta and beta' regulatory subunits for its activity.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M800332-MCP200

The slowpoke channel binding protein Slob from Drosophila melanogaster exhibits regulatable protein kinase activity

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M800332-MCP200

Improved titanium dioxide enrichment of phosphopeptides from HeLa cells and high confident phosphopeptide identification by cross-validation of MS/MS and MS/MS/MS spectra

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M800332-MCP200

Identification of PSD-93 as a substrate for the Src family tyrosine kinase Fyn.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M800332-MCP200

Phosphoproteome Analysis of Fission Yeast

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M800332-MCP200

10.1074/MCP.M800332-MCP200

21 January 2018

Identifiers

DOI

1 reference

26 July 2017

1 reference

26 July 2017

1 reference

PubMed ID

18974045