Yeast genetic analysis reveals the involvement of chromatin reassembly factors in repressing HIV-1 basal transcription (Q33400343)

26 July 2017

Yeast genetic analysis reveals the involvement of chromatin reassembly factors in repressing HIV-1 basal transcription (English)

1 reference

26 July 2017

Albert Jordan

7

0 references

Sebastián Chávez

object named as

Sebastián Chávez

8

0 references

author name string

Manuela Vanti

1

1 reference

26 July 2017

Edurne Gallastegui

2

1 reference

26 July 2017

Iñaki Respaldiza

3

1 reference

26 July 2017

Alfonso Rodríguez-Gil

4

1 reference

26 July 2017

Fernando Gómez-Herreros

5

1 reference

26 July 2017

Silvia Jimeno-González

6

1 reference

26 July 2017

language of work or name

1 reference

16 January 2009

1 reference

26 July 2017

1 reference

26 July 2017

5

1 reference

26 July 2017

e1000339

1 reference

26 July 2017

1

1 reference

Creative Commons Attribution 4.0 International

26 July 2017

start time

16 January 2009

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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21 June 2018

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The histone chaperone protein Nucleosome Assembly Protein-1 (hNAP-1) binds HIV-1 Tat and promotes viral transcription

21 June 2018

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The receptor tyrosine kinase RON represses HIV-1 transcription by targeting RNA polymerase II processivity

21 June 2018

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Transcription-dependent gene looping of the HIV-1 provirus is dictated by recognition of pre-mRNA processing signals

21 June 2018

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CBF-1 promotes transcriptional silencing during the establishment of HIV-1 latency

21 June 2018

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The 73 kDa subunit of the CPSF complex binds to the HIV-1 LTR promoter and functions as a negative regulatory factor that is inhibited by the HIV-1 Tat protein.

21 June 2018

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Chd1 and yFACT act in opposition in regulating transcription.

21 June 2018

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Chromatin-associated regulation of HIV-1 transcription: implications for the development of therapeutic strategies

21 June 2018

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Sustained induction of NF-kappa B is required for efficient expression of latent human immunodeficiency virus type 1.

21 June 2018

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21 June 2018

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Suv39H1 and HP1gamma are responsible for chromatin-mediated HIV-1 transcriptional silencing and post-integration latency

21 June 2018

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The Spt6 SH2 domain binds Ser2-P RNAPII to direct Iws1-dependent mRNA splicing and export

21 June 2018

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A gene-specific requirement for FACT during transcription is related to the chromatin organization of the transcribed region

21 June 2018

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Effect of SWI/SNF chromatin remodeling complex on HIV-1 Tat activated transcription

21 June 2018

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The SWI/SNF chromatin-remodeling complex is a cofactor for Tat transactivation of the HIV promoter

21 June 2018

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Requirement for SWI/SNF chromatin-remodeling complex in Tat-mediated activation of the HIV-1 promoter

21 June 2018

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Transcriptional activators are dispensable for transcription in the absence of Spt6-mediated chromatin reassembly of promoter regions

21 June 2018

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Tat gets the "green" light on transcription initiation

21 June 2018

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Molecular mechanisms of HIV-1 proviral latency

21 June 2018

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Severe adenine starvation activates Ty1 transcription and retrotransposition in Saccharomyces cerevisiae.

21 June 2018

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Human immunodeficiency virus type 1 Vpr-dependent cell cycle arrest through a mitogen-activated protein kinase signal transduction pathway

21 June 2018

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Genome-wide analysis of chromosomal features repressing human immunodeficiency virus transcription.

21 June 2018

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Regulation of HIV-1 gene expression by histone acetylation and factor recruitment at the LTR promoter

21 June 2018

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The FACT complex travels with elongating RNA polymerase II and is important for the fidelity of transcriptional initiation in vivo

21 June 2018

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Transcription elongation factors repress transcription initiation from cryptic sites.

21 June 2018

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Tracking FACT and the RNA polymerase II elongation complex through chromatin in vivo

21 June 2018

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HIV reproducibly establishes a latent infection after acute infection of T cells in vitro.

21 June 2018

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Chromatin remodeling protein Chd1 interacts with transcription elongation factors and localizes to transcribed genes

21 June 2018

1 reference

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Dual roles for Spt5 in pre-mRNA processing and transcription elongation revealed by identification of Spt5-associated proteins

21 June 2018

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RNA polymerase II elongation factors of Saccharomyces cerevisiae: a targeted proteomics approach

21 June 2018

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Counterregulation of chromatin deacetylation and histone deacetylase occupancy at the integrated promoter of human immunodeficiency virus type 1 (HIV-1) by the HIV-1 repressor YY1 and HIV-1 activator Tat

21 June 2018

1 reference

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Differential effects of chromatin and Gcn4 on the 50-fold range of expression among individual yeast Ty1 retrotransposons

21 June 2018

1 reference

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The site of HIV-1 integration in the human genome determines basal transcriptional activity and response to Tat transactivation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2613532

In vivo chromatin remodeling by yeast ISWI homologs Isw1p and Isw2p

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2613532

High-resolution localization of Drosophila Spt5 and Spt6 at heat shock genes in vivo: roles in promoter proximal pausing and transcription elongation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2613532

Spt5 and spt6 are associated with active transcription and have characteristics of general elongation factors in D. melanogaster

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2613532

The human factors YY1 and LSF repress the human immunodeficiency virus type 1 long terminal repeat via recruitment of histone deacetylase 1.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2613532

Activation of integrated provirus requires histone acetyltransferase. p300 and P/CAF are coactivators for HIV-1 Tat

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2613532

Transcriptional pausing at +62 of the HIV-1 nascent RNA modulates formation of the TAR RNA structure

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2613532

A novel CDK9-associated C-type cyclin interacts directly with HIV-1 Tat and mediates its high-affinity, loop-specific binding to TAR RNA

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2613532

Designer deletion strains derived from Saccharomyces cerevisiae S288C: a useful set of strains and plasmids for PCR-mediated gene disruption and other applications

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2613532

Transcriptional interference perturbs the binding of Sp1 to the HIV-1 promoter.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2613532

DSIF, a novel transcription elongation factor that regulates RNA polymerase II processivity, is composed of human Spt4 and Spt5 homologs

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2613532

The yeast HPR1 gene has a functional role in transcriptional elongation that uncovers a novel source of genome instability

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2613532

cis-acting sequences located downstream of the human immunodeficiency virus type 1 promoter affect its chromatin structure and transcriptional activity

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2613532

The hormone responsive region of mouse mammary tumor virus positions a nucleosome and precludes access of nuclear factor I to the promoter

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2613532

Transcriptional activation and chromatin remodeling of the HIV-1 promoter in response to histone acetylation.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2613532

Constitutive repression and nuclear factor I-dependent hormone activation of the mouse mammary tumor virus promoter in Saccharomyces cerevisiae

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2613532

Chromatin disruption in the promoter of human immunodeficiency virus type 1 during transcriptional activation.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2613532

Comparison of 5' and 3' long terminal repeat promoter function in human immunodeficiency virus

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2613532

Delineating minimal protein domains and promoter elements for transcriptional activation by lentivirus Tat proteins

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2613532

Mutational analysis of the trans-activation-responsive region of the human immunodeficiency virus type I long terminal repeat

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2613532

Anti-termination of transcription within the long terminal repeat of HIV-1 by tat gene product

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2613532

Upstream activation sequence-dependent alteration of chromatin structure and transcription activation of the yeast GAL1-GAL10 genes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2613532

Structure, sequence, and position of the stem-loop in tar determine transcriptional elongation by tat through the HIV-1 long terminal repeat

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2613532

Detailed mutational analysis of TAR RNA: critical spacing between the bulge and loop recognition domains

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2613532

Inactivation of the SNF5 transcription factor gene abolishes the lethal phenotype induced by the expression of HIV-1 integrase in yeast.

21 June 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1000339

HIV reverse transcription in yeast

21 January 2018

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https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1000339

Isw1 chromatin remodeling ATPase coordinates transcription elongation and termination by RNA polymerase II.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1000339

Orientation-dependent regulation of integrated HIV-1 expression by host gene transcriptional readthrough.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1000339

Identification of Limiting Steps for Efficient Trans-activation of HIV-1 Promoter by Tat inSaccharomyces cerevisiae

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1000339

Activator-dependent regulation of transcriptional pausing on nucleosomal templates

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19148280

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

A simple in vivo assay for measuring the efficiency of gene length-dependent processes in yeast mRNA biogenesis

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19148280

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PGEN.1000339

1 reference

26 July 2017

1 reference

26 July 2017

1 reference