Fragment-based identification of druggable 'hot spots' of proteins using Fourier domain correlation techniques (Q33403707)

26 July 2017

Fragment-based identification of druggable 'hot spots' of proteins using Fourier domain correlation techniques (English)

1 reference

26 July 2017

Dima Kozakov

2

0 references

Sandor Vajda

object named as

Sandor Vajda

8

0 references

author name string

Ryan Brenke

1

1 reference

26 July 2017

Gwo-Yu Chuang

3

1 reference

26 July 2017

Dmitri Beglov

4

1 reference

26 July 2017

David Hall

5

1 reference

26 July 2017

Melissa R Landon

6

1 reference

26 July 2017

Carla Mattos

7

1 reference

26 July 2017

language of work or name

English

0 references

publication date

28 January 2009

1 reference

26 July 2017

1 reference

26 July 2017

25

1 reference

26 July 2017

621-627

1 reference

26 July 2017

5

1 reference

DARS (Decoys As the Reference State) potentials for protein-protein docking

26 July 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2647826

Motifs for molecular recognition exploiting hydrophobic enclosure in protein-ligand binding

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2647826

Characterization of protein-ligand interaction sites using experimental and computational methods

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2647826

Druggability indices for protein targets derived from NMR-based screening data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2647826

Pocketome via comprehensive identification and classification of ligand binding envelopes.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2647826

Structure-based design of aliskiren, a novel orally effective renin inhibitor

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2647826

Computational mapping identifies the binding sites of organic solvents on proteins

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2647826

Unraveling hot spots in binding interfaces: progress and challenges

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2647826

Experimental and computational mapping of the binding surface of a crystalline protein

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2647826

Is there a future for renin inhibitors?

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2647826

Structure-based drug design: the discovery of novel nonpeptide orally active inhibitors of human renin

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2647826

Locating interaction sites on proteins: the crystal structure of thermolysin soaked in 2% to 100% isopropanol

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2647826

21 June 2018

The Protein Data Bank

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2647826

Locating and characterizing binding sites on proteins

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2647826

Satisfying hydrogen bonding potential in proteins

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2647826

Analogous inhibitors of elastase do not always bind analogously

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2647826

Interaction of a peptidomimetic aminimide inhibitor with elastase

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2647826

A computational procedure for determining energetically favorable binding sites on biologically important macromolecules

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2647826

CHARMM: A program for macromolecular energy, minimization, and dynamics calculations

21 June 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTP036

A method for localizing ligand binding pockets in protein structures.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTP036

PIPER: an FFT-based protein docking program with pairwise potentials.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTP036

Q-SiteFinder: an energy-based method for the prediction of protein-ligand binding sites.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTP036

Multiple solvent crystal structures: probing binding sites, plasticity and hydration

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTP036

Functionality maps of binding sites: a multiple copy simultaneous search method

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTP036

Identification of substrate binding sites in enzymes by computational solvent mapping.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTP036

Hydrophobic docking: a proposed enhancement to molecular recognition techniques.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTP036

Multiple copy simultaneous search and construction of ligands in binding sites: application to inhibitors of HIV-1 aspartic proteinase

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19176554

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Novel statistical-thermodynamic methods to predict protein-ligand binding positions using probability distribution functions

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19176554

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/BIOINFORMATICS/BTP036

1 reference

journals/bioinformatics/BrenkeKCBHLMV09

26 July 2017

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

26 July 2017

1 reference