Molecular dynamics simulations to gain insights into the stability and morphologies of K3 oligomers from beta2-microglobulin (Q33411468)

26 July 2017

title

Molecular dynamics simulations to gain insights into the stability and morphologies of K3 oligomers from beta2-microglobulin (English)

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molecular dynamics simulation

26 July 2017

main subject

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author name string

Fang PS

1

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26 July 2017

Zhao JH

2

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26 July 2017

Liu HL

3

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26 July 2017

Liu KT

4

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26 July 2017

Chen JT

5

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26 July 2017

Lin HY

6

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26 July 2017

Huang CH

7

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26 July 2017

Fang HW

8

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26 July 2017

publication date

1 April 2009

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Journal of Biomolecular Structure and Dynamics

26 July 2017

published in

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26 July 2017

volume

26

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26 July 2017

issue

5

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26 July 2017

page(s)

549-559

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Common motifs in protein self-assembly

26 July 2017

cites work

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2009.10507270

Evidence for a mechanism of amyloid formation involving molecular reorganisation within native-like precursor aggregates

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2009.10507270

Atomic structures of amyloid cross-beta spines reveal varied steric zippers

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2009.10507270

Structural insights into the polymorphism of amyloid-like fibrils formed by region 20-29 of amylin revealed by solid-state NMR and X-ray fiber diffraction

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2009.10507270

Small assemblies of unmodified amyloid beta-protein are the proximate neurotoxin in Alzheimer's disease

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2009.10507270

Common structure of soluble amyloid oligomers implies common mechanism of pathogenesis

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2009.10507270

Inherent toxicity of aggregates implies a common mechanism for protein misfolding diseases

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2009.10507270

Stabilities and conformations of Alzheimer's beta -amyloid peptide oligomers (Abeta 16-22, Abeta 16-35, and Abeta 10-35): Sequence effects

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2009.10507270

Short peptide amyloid organization: stabilities and conformations of the islet amyloid peptide NFGAIL

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2009.10507270

Structural stability and dynamics of an amyloid-forming peptide GNNQQNY from the yeast prion sup-35.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2009.10507270

Energy landscape of amyloidogenic peptide oligomerization by parallel-tempering molecular dynamics simulation: significant role of Asn ladder

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2009.10507270

The stability and dynamics of the human calcitonin amyloid peptide DFNKF

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2009.10507270

MHC superfamily structure and the immune system

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2009.10507270

Investigation of a peptide responsible for amyloid fibril formation of beta 2-microglobulin by achromobacter protease I.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2009.10507270

Prion recognition elements govern nucleation, strain specificity and species barriers

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2009.10507270

3D structure of amyloid protofilaments of beta2-microglobulin fragment probed by solid-state NMR.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2009.10507270

Experimental constraints on quaternary structure in Alzheimer's beta-amyloid fibrils

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2009.10507270

Correlation of structural elements and infectivity of the HET-s prion

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2009.10507270

3D structure of Alzheimer's amyloid-beta(1-42) fibrils

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2009.10507270

General structural motifs of amyloid protofilaments

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2009.10507270

Structures of a peptide fragment of beta2-microglobulin studied by replica-exchange molecular dynamics simulations - towards the understanding of the mechanism of amyloid formation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2009.10507270

Consensus features in amyloid fibrils: sheet-sheet recognition via a (polar or nonpolar) zipper structure

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2009.10507270

Verification of the turn at positions 22 and 23 of the beta-amyloid fibrils with Italian mutation using solid-state NMR.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2009.10507270

Beta2-microglobulin amyloid fragment organization and morphology and its comparison to Abeta suggests that amyloid aggregation pathways are sequence specific

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2009.10507270

Structural transformation and aggregation of human alpha-synuclein in trifluoroethanol: non-amyloid component sequence is essential and beta-sheet formation is prerequisite to aggregation

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2009.10507270

Solution conditions can promote formation of either amyloid protofilaments or mature fibrils from the HypF N-terminal domain

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2009.10507270

Group additive contributions to the alcohol-induced alpha-helix formation of melittin: implication for the mechanism of the alcohol effects on proteins.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2009.10507270

Association of thin filaments into thick filaments revealing the structural hierarchy of amyloid fibrils

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2009.10507270

Mutational analysis of the propensity for amyloid formation by a globular protein

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2009.10507270

Beta2-microglobulin amyloidosis: insights from conservation analysis and fibril modelling by protein docking techniques

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2009.10507270

An amyloid-forming segment of beta2-microglobulin suggests a molecular model for the fibril

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2009.10507270

ZDOCK: an initial-stage protein-docking algorithm.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2009.10507270

Assessment of CAPRI predictions in rounds 3-5 shows progress in docking procedures

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2009.10507270

ZDOCK predictions for the CAPRI challenge.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2009.10507270

Derivation of class II force fields. VI. Carbohydrate compounds and anomeric effects

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2009.10507270

A comparative study of amyloid fibril formation by residues 15-19 of the human calcitonin hormone: a single beta-sheet model with a small hydrophobic core

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2009.10507270

Dissecting the assembly of Abeta16-22 amyloid peptides into antiparallel beta sheets.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2009.10507270

Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2009.10507270

Seeding-dependent propagation and maturation of amyloid fibril conformation

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2009.10507270

Stereospecific amyloid-like fibril formation by a peptide fragment of beta2-microglobulin

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2009.10507270

Modeling the Alzheimer Abeta17-42 fibril architecture: tight intermolecular sheet-sheet association and intramolecular hydrated cavities

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2009.10507270

A possible role for pi-stacking in the self-assembly of amyloid fibrils

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2009.10507270

Flexible docking of an amyloid-forming peptide from beta(2)-microglobulin

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2009.10507270

Molecular Dynamics Simulations and Free Energy Analyses on the Dimer Formation of an Amyloidogenic Heptapeptide from Human β2-Microglobulin: Implication for the Protofibril Structure

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2009.10507270

10.1080/07391102.2009.10507270

21 January 2018

Identifiers

DOI

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26 July 2017

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