A genome wide survey of SNP variation reveals the genetic structure of sheep breeds (Q33416022)

26 July 2017

title

A genome wide survey of SNP variation reveals the genetic structure of sheep breeds (English)

1 reference

26 July 2017

Annette McGrath

6

0 references

Michael P. Heaton

Michael P Heaton

4

0 references

Frank W. Nicholas

Frank W Nicholas

15

0 references

Brian P Dalrymple

Brian P Dalrymple

3

0 references

John C. McEwan

John McEwan

12

0 references

Sean M. McWilliam

Sean McWilliam

10

0 references

author name string

James W Kijas

1

1 reference

26 July 2017

David Townley

2

1 reference

26 July 2017

Jillian F Maddox

5

1 reference

26 July 2017

Peter Wilson

7

1 reference

26 July 2017

Roxann G Ingersoll

8

1 reference

26 July 2017

Russell McCulloch

9

1 reference

26 July 2017

Dave Tang

11

1 reference

26 July 2017

Noelle Cockett

13

1 reference

26 July 2017

V Hutton Oddy

14

1 reference

26 July 2017

Herman Raadsma

16

1 reference

26 July 2017

International Sheep Genomics Consortium

17

1 reference

26 July 2017

language of work or name

English

0 references

publication date

3 March 2009

1 reference

26 July 2017

1 reference

26 July 2017

volume

4

1 reference

26 July 2017

issue

3

1 reference

26 July 2017

page(s)

e4668

1 reference

Creative Commons CC0 License

26 July 2017

copyright license

start time

3 March 2009

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted, dedicated to the public domain by copyright holder

0 references

cites work

Arlequin (version 3.0): an integrated software package for population genetics data analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2652362

A HapMap harvest of insights into the genetics of common disease

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2652362

Highly effective SNP-based association mapping and management of recessive defects in livestock

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2652362

SNP discovery and allele frequency estimation by deep sequencing of reduced representation libraries

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2652362

Analysis and application of European genetic substructure using 300 K SNP information

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2652362

Canine population structure: assessment and impact of intra-breed stratification on SNP-based association studies

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2652362

Whole genome linkage disequilibrium maps in cattle

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2652362

A second generation human haplotype map of over 3.1 million SNPs

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2652362

Large-scale mitochondrial DNA analysis of the domestic goat reveals six haplogroups with high diversity

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2652362

Efficient mapping of mendelian traits in dogs through genome-wide association

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2652362

PLINK: a tool set for whole-genome association and population-based linkage analyses

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2652362

Using comparative genomics to reorder the human genome sequence into a virtual sheep genome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2652362

SNP discovery via 454 transcriptome sequencing

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2652362

SNP mining porcine ESTs with MAVIANT, a novel tool for SNP evaluation and annotation.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2652362

A validated whole-genome association study of efficient food conversion in cattle

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2652362

Five ovine mitochondrial lineages identified from sheep breeds of the near East

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2652362

A first-generation metric linkage disequilibrium map of bovine chromosome 6

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2652362

A map of recent positive selection in the human genome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2652362

Genome sequence, comparative analysis and haplotype structure of the domestic dog

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2652362

SNPdetector: a software tool for sensitive and accurate SNP detection

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2652362

Evidence of three maternal lineages in Near Eastern sheep supporting multiple domestication events

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2652362

Mitochondrial sequence reveals high levels of gene flow between breeds of domestic sheep from Asia and Europe

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2652362

Modeling linkage disequilibrium in natural populations: the example of the Soay sheep population of St. Kilda, Scotland.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2652362

A genetic variation map for chicken with 2.8 million single-nucleotide polymorphisms

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2652362

Informativeness of genetic markers for inference of ancestry.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2652362

Molecular analysis of wild and domestic sheep questions current nomenclature and provides evidence for domestication from two different subspecies

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2652362

Selection and use of SNP markers for animal identification and paternity analysis in U.S. beef cattle

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2652362

Multiple maternal origins and weak phylogeographic structure in domestic goats

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2652362

Prediction of total genetic value using genome-wide dense marker maps

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2652362

A SNP resource for human chromosome 22: extracting dense clusters of SNPs from the genomic sequence

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2652362

Inference of population structure using multilocus genotype data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2652362

PolyPhred: automating the detection and genotyping of single nucleotide substitutions using fluorescence-based resequencing

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2652362

Variation in the control region sequence of the sheep mitochondrial genome.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2652362

High resolution of human evolutionary trees with polymorphic microsatellites

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2652362

Sheep mitochondrial DNA variation in European, Caucasian, and Central Asian areas

21 June 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0004668

Globally dispersed Y chromosomal haplotypes in wild and domestic sheep

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0004668

Genetic relationships and admixture among sheep breeds from Northern Spain assessed using microsatellites.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0004668

Genetic structure of European sheep breeds.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0004668

A sequence-based variation map of 8.27 million SNPs in inbred mouse strains

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0004668

The origin of selection signatures on bovine chromosome 6.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0004668

Accuracy of marker-assisted selection with single markers and marker haplotypes in cattle

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0004668

Demonstrating stratification in a European American population

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0004668

An assessment of population structure in eight breeds of cattle using a whole genome SNP panel

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0004668

Population structure, genetic variation and morphological diversity in indigenous sheep of Ethiopia.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0004668

Nucleotide diversity on the ovine Y chromosome.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0004668

An Icelandic example of the impact of population structure on association studies

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2652362

Genetic diversity and subdivision of 57 European and Middle-Eastern sheep breeds

31 October 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0004668

Unfolding of population structure in Baltic sheep breeds using microsatellite analysis

21 January 2018

1 reference

12 December 2020

Microsatellite-based diversity analysis and genetic relationships of three Indian sheep breeds

1 reference

12 December 2020

BeadArray technology: enabling an accurate, cost-effective approach to high-throughput genotyping

1 reference

12 December 2020

Genome-wide genetic diversity of Holstein Friesian cattle reveals new insights into Australian and global population variability, including impact of selection

1 reference

12 December 2020

10.1371/JOURNAL.PONE.0004668

Identifiers

DOI

1 reference

26 July 2017

0 references

1 reference

26 July 2017

1 reference