GrowMatch: an automated method for reconciling in silico/in vivo growth predictions (Q33417622)

26 July 2017

GrowMatch: an automated method for reconciling in silico/in vivo growth predictions (English)

1 reference

26 July 2017

0 references

Costas D Maranas

2

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author name string

Vinay Satish Kumar

series ordinal

1

1 reference

26 July 2017

13 March 2009

1 reference

PLOS Computational Biology

26 July 2017

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26 July 2017

5

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26 July 2017

3

1 reference

26 July 2017

e1000308

1 reference

Creative Commons Attribution 4.0 International

26 July 2017

start time

13 March 2009

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

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cites work

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Three factors underlying incorrect in silico predictions of essential metabolic genes

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21 June 2018

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A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic information

21 June 2018

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Plasticity of genetic interactions in metabolic networks of yeast

21 June 2018

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Global reconstruction of the human metabolic network based on genomic and bibliomic data

21 June 2018

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Systems approach to refining genome annotation

21 June 2018

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Experimental and computational assessment of conditionally essential genes in Escherichia coli

21 June 2018

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Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection

21 June 2018

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A metabolic network in the evolutionary context: multiscale structure and modularity

21 June 2018

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Identifying metabolic enzymes with multiple types of association evidence

21 June 2018

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Towards multidimensional genome annotation

21 June 2018

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Essential genes of a minimal bacterium

21 June 2018

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21 June 2018

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Genome-scale thermodynamic analysis of Escherichia coli metabolism

21 June 2018

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Comparative analyses of fundamental differences in membrane transport capabilities in prokaryotes and eukaryotes

21 June 2018

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Identification of essential genes in Streptococcus pneumoniae by allelic replacement mutagenesis.

21 June 2018

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Homocysteine toxicity in Escherichia coli is caused by a perturbation of branched-chain amino acid biosynthesis

21 June 2018

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Regulatory on/off minimization of metabolic flux changes after genetic perturbations

21 June 2018

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Exploring the diversity of complex metabolic networks.

21 June 2018

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EcoCyc: a comprehensive database resource for Escherichia coli

21 June 2018

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Reconstruction and validation of Saccharomyces cerevisiae iND750, a fully compartmentalized genome-scale metabolic model

21 June 2018

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A Bayesian method for identifying missing enzymes in predicted metabolic pathway databases

21 June 2018

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Integrating high-throughput and computational data elucidates bacterial networks

21 June 2018

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Genome-wide RNAi analysis of growth and viability in Drosophila cells

21 June 2018

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Flux coupling analysis of genome-scale metabolic network reconstructions.

21 June 2018

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The KEGG resource for deciphering the genome

21 June 2018

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Experimental Determination and System Level Analysis of Essential Genes in Escherichia coli MG1655

21 June 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2645679

An expanded genome-scale model of Escherichia coli K-12 (iJR904 GSM/GPR)

21 June 2018

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Missing genes in metabolic pathways: a comparative genomics approach

21 June 2018

1 reference

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Essential Bacillus subtilis genes

21 June 2018

1 reference

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Escherichia coli K-12 undergoes adaptive evolution to achieve in silico predicted optimal growth

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2645679

Analysis of optimality in natural and perturbed metabolic networks

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2645679

Functional profiling of the Saccharomyces cerevisiae genome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2645679

Identification of 113 conserved essential genes using a high-throughput gene disruption system in Streptococcus pneumoniae

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2645679

Comprehensive identification of conditionally essential genes in mycobacteria

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2645679

Large-scale analysis of gene function in Caenorhabditis elegans by high-throughput RNAi

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2645679

In silico predictions of Escherichia coli metabolic capabilities are consistent with experimental data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2645679

The Escherichia coli MG1655 in silico metabolic genotype: its definition, characteristics, and capabilities

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2645679

Optimization based automated curation of metabolic reconstructions

21 June 2018

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1000308

Predicting genes for orphan metabolic activities using phylogenetic profiles

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1000308

Filling gaps in a metabolic network using expression information.

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1000308

10.1371/JOURNAL.PCBI.1000308

21 January 2018

Identifiers

DOI

1 reference

26 July 2017

journals/ploscb/KumarM09

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

26 July 2017

1 reference

PubMed ID

19282964