Expediting the development of targeted SRM assays: using data from shotgun proteomics to automate method development (Q33423155)

26 July 2017

title

Expediting the development of targeted SRM assays: using data from shotgun proteomics to automate method development (English)

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26 July 2017

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Amol Prakash

1

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26 July 2017

Daniela M Tomazela

2

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26 July 2017

Barbara Frewen

3

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26 July 2017

Brendan Maclean

4

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26 July 2017

Gennifer Merrihew

5

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26 July 2017

Scott Peterman

6

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26 July 2017

Michael J Maccoss

7

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26 July 2017

publication date

1 June 2009

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Journal of Proteome Research

26 July 2017

published in

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26 July 2017

volume

8

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26 July 2017

issue

6

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26 July 2017

page(s)

2733-2739

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Use of shotgun proteomics for the identification, confirmation, and correction of C. elegans gene annotations

26 July 2017

cites work

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2743471

Using BiblioSpec for creating and searching tandem MS peptide libraries

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2743471

Quantitative, multiplexed assays for low abundance proteins in plasma by targeted mass spectrometry and stable isotope dilution

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2743471

Absolute multiplexed quantitative analysis of protein expression during muscle development using QconCAT.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2743471

Analysis of the Saccharomyces cerevisiae proteome with PeptideAtlas

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2743471

Analysis of peptide MS/MS spectra from large-scale proteomics experiments using spectrum libraries

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2743471

21 June 2018

The PeptideAtlas project

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2743471

Quantitative analysis of protein phosphorylation in mouse brain by hypothesis-driven multistage mass spectrometry

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2743471

Quantitative mass spectrometric multiple reaction monitoring assays for major plasma proteins

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2743471

Scoring proteomes with proteotypic peptide probes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2743471

The use of proteotypic peptide libraries for protein identification

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2743471

Candidate-based proteomics in the search for biomarkers of cardiovascular disease

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2743471

Open source system for analyzing, validating, and storing protein identification data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2743471

Absolute quantification of proteins and phosphoproteins from cell lysates by tandem MS

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2743471

Method to compare collision-induced dissociation spectra of peptides: potential for library searching and subtractive analysis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2743471

Computational prediction of proteotypic peptides for quantitative proteomics.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2743471

Analysis of protein phosphorylation by hypothesis-driven multiple-stage mass spectrometry

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2743471

Absolute quantification of the model biomarker prostate-specific antigen in serum by LC-Ms/MS using protein cleavage and isotope dilution mass spectrometry

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2743471

The need for a public proteomics repository

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2743471

Multiplexed absolute quantification for proteomics using concatenated signature peptides encoded by QconCAT genes

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2743471

Selective detection of membrane proteins without antibodies: a mass spectrometric version of the Western blot

31 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19326923

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1021/PR801028B

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26 July 2017

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26 July 2017

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