ESPRIT: estimating species richness using large collections of 16S rRNA pyrosequences (Q33439384)

26 July 2017

ESPRIT: estimating species richness using large collections of 16S rRNA pyrosequences (English)

1 reference

26 July 2017

1 reference

Yijun Sun

1

1 reference

26 July 2017

Yunpeng Cai

2

1 reference

26 July 2017

Li Liu

3

1 reference

26 July 2017

Fahong Yu

4

1 reference

26 July 2017

Michael L Farrell

5

1 reference

26 July 2017

William McKendree

6

1 reference

26 July 2017

William Farmerie

7

1 reference

26 July 2017

language of work or name

English

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publication date

5 May 2009

1 reference

26 July 2017

Nucleic Acids Research

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26 July 2017

37

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26 July 2017

10

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26 July 2017

e76

1 reference

The Ribosomal Database Project: improved alignments and new tools for rRNA analysis

26 July 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2691849

Pyrosequencing enumerates and contrasts soil microbial diversity

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2691849

Microbial population structures in the deep marine biosphere

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2691849

Accuracy and quality of massively parallel DNA pyrosequencing

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2691849

Use of simulated data sets to evaluate the fidelity of metagenomic processing methods

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2691849

Environmental shotgun sequencing: its potential and challenges for studying the hidden world of microbes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2691849

Microbial diversity in the deep sea and the underexplored "rare biosphere"

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2691849

NAST: a multiple sequence alignment server for comparative analysis of 16S rRNA genes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2691849

FastGroupII: a web-based bioinformatics platform for analyses of large 16S rDNA libraries

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2691849

Computational improvements reveal great bacterial diversity and high metal toxicity in soil

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2691849

Genome sequencing in microfabricated high-density picolitre reactors

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2691849

Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2691849

MAFFT version 5: improvement in accuracy of multiple sequence alignment

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2691849

MUSCLE: multiple sequence alignment with high accuracy and high throughput

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2691849

Local homology recognition and distance measures in linear time using compressed amino acid alphabets

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2691849

Cultivation of globally distributed soil bacteria from phylogenetic lineages previously only detected in cultivation-independent surveys

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2691849

Molecular microbial diversity in soils from eastern Amazonia: evidence for unusual microorganisms and microbial population shifts associated with deforestation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2691849

Compositional biases of bacterial genomes and evolutionary implications

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2691849

Dinucleotide relative abundance extremes: a genomic signature

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2691849

A general method applicable to the search for similarities in the amino acid sequence of two proteins

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2691849

Pyrosequencing analysis of the oral microflora of healthy adults

21 June 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FNAR%2FGKP285

Bayesian classifiers for detecting HGT using fixed and variable order markov models of genomic signatures.

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FNAR%2FGKP285

The Nonconcept of Species Diversity: A Critique and Alternative Parameters.

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FNAR%2FGKP285

The development and impact of 454 sequencing

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19417062

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKP285

1 reference

release_mo3tvly42rbclg2eggu2aoa7hi

26 July 2017

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/mo3tvly42rbclg2eggu2aoa7hi

mapped directly with Wikidata item

24 November 2022

based on heuristic

PMCID

2691849

1 reference

26 July 2017

1 reference